Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq60463 235 1e-56 >seq60463 Length=11997 Score = 235 bits (260), Expect = 1e-56 Identities = 856/1325 (65%), Gaps = 26/1325 (2%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || |||||||| || || || || || || |||||||| || || || || Sbjct 10900 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 10841 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || || ||| ||| || || ||||| || || || ||||| Sbjct 10840 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 10781 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| | || ||| || | || | || ||||||||||||||| || | ||| Sbjct 10780 TTCTACGGCCTGTGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGG 10721 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || ||||||||||| ||||| || ||||| | || ||||| | || | | Sbjct 10720 TCGCTCTTTTGCCCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGAG 10661 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAATTCCCGCACA 364115 | ||||| || || |||||| || || | ||| ||| | Sbjct 10660 GAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCC----A 10605 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | |||| ||||| |||||| | || || ||||| ||||| || || ||||| ||| |||| Sbjct 10604 GGAGCTGTGGTTCGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTA 10545 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 ||| ||| | |||||| |||||||||||||||||||||| || || || ||| | || Sbjct 10544 CAAGGATGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAA 10485 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || || ||| | | | ||||| | ||||||||| ||||| || ||||| || Sbjct 10484 CCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 10425 Query 364296 GTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGA 364355 ||| ||||||| || ||| | | | || ||||||||| || | || | || Sbjct 10424 CTCGCTCGCGCTGCCCAAGTTCATCACCAACGGCGAGTTTGACCACAAGAAGCTGCACGA 10365 Query 364356 CGTAACCT-ATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 ||| | | | || | || || ||| ||||||| ||||||| || || || || Sbjct 10364 CGT--CGTGAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCC 10307 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 | || || ||| || || ||||| || | || || || |||| || |||||| Sbjct 10306 GTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATTGGAGTGCAGGGC 10247 Query 364474 CTCGCTGACGTTTTTATGATGCT----CA-AGATGGCATTTGATTCGCCTGACGCTCGTG 364528 || || ||||| || ||||| || || ||| | || || | || || || | Sbjct 10246 CTGGCCGACGTCTTCATGATCCTGCGCCACCCGTGGGA---GA-GCGAC-GAGGCCCGCG 10192 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || || | ||||| || || || || ||||| || || ||| || Sbjct 10191 AGCTCAACCGCGCCATCTTCGAGACCATCTACCACGCCGCCCTGGTCGCCTCGAACGAGC 10132 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | || | | |||| | ||| || |||||||| || || || |||| || Sbjct 10131 TCGCGCAGGTCGAGGGCACCTACCAGACCTATGAGGGCTCGCCCGCGTCCAAGGGCAAGC 10072 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 ||||| || || ||| ||| ||| || | | | ||| |||||| ||||| || Sbjct 10071 TCCAGCCCGACCTCTGGGGAGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCG 10012 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 ||||| | |||| ||| |||||||| ||| | ||||||||||||||||| | Sbjct 10011 CCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCT 9952 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || | |||||||| || |||||||||||||| || || | || | ||| | || Sbjct 9951 CGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACA 9892 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 | ||||| | || |||| || || | || || || || |||| | || || Sbjct 9891 CCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTGC 9832 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 | ||||| || | || | | || | |||||| | || || | || || || Sbjct 9831 AGCAGCGCGGCCTCT-GGTCGCCGGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCA 9773 Query 364948 GTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 || ||| || || |||| | || || || | ||| | ||||| ||||| ||||| Sbjct 9772 GTCCAGCGCA-TCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGA 9714 Query 365007 AATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 | | ||| |||| || ||||| || |||||| || | ||| ||||| Sbjct 9713 GCTCCCGCAGCGCGTCATCATCGACATGGCCGCTGATCGCTCGGCCTACATCGACCAGAG 9654 Query 365067 CCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTT 365126 ||||||| | ||||| | |||| |||| | | ||||||||| || || ||||| || Sbjct 9653 CCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTCGCCAAGCTCACCTCGATGCACTT 9594 Query 365127 CTACG 365131 ||||| Sbjct 9593 CTACG 9589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302304287937752