Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq62566 127 1e-24 seq6317 105 4e-18 seq49488 86.0 4e-12 seq59660 84.2 1e-11 >seq62566 Length=5832 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 2441 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 2500 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2501 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2535 >seq6317 Length=138 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 19 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 78 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 79 GCTGACAATATTTAGCCTT 97 >seq49488 Length=478 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | || || |||| || | || || || || || Sbjct 274 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 215 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || ||||||| ||| | || || |||||| || ||||||||||| || Sbjct 214 GATGAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 155 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || || || || || || ||||| | ||||| || || ||||| | ||| || || Sbjct 154 CTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 95 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 94 GAAGATCTGCAT 83 >seq59660 Length=6842 Score = 84.2 bits (92), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC---GGTA 20010 |||||||| ||||||| ||||||||||||||||||||| |||||| ||||| | | | Sbjct 5440 TTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCAGTCTCTCACTGACA 5499 Query 20011 ATATTTAGCCTT 20022 |||||||||||| Sbjct 5500 ATATTTAGCCTT 5511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334690692828716