Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq59610 104 3e-17 >seq59610 Length=50575 Score = 104 bits (114), Expect = 3e-17 Identities = 401/625 (64%), Gaps = 14/625 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||| || | || ||||| || |||| ||| || ||||| | | Sbjct 5360 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 5301 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 || || | ||| || || ||||||||||| || | || |||| || || || || || | Sbjct 5300 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGA-TGGAGCAGAAGCTGCCGGAGAAGA 5242 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA------T 93263 | || || || ||||| || ||| | | | || |||||||| | ||| | | Sbjct 5241 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCT 5182 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || ||||||| || | ||||| ||||| || ||||| | | || | || |||| Sbjct 5181 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGA 5122 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | ||| || ||| || |||| | || | ||| || ||||| | || | Sbjct 5121 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 5062 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||||| || || |||| ||||| || || |||||||| |||||||| || | || | Sbjct 5061 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 5002 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | | ||| || || | || | | |||| || || || || || ||| Sbjct 5001 CGGGCACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGC 4942 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 || || || || |||| | ||||| || || || |||| || | | ||| | Sbjct 4941 TGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTCAGCGATT 4882 Query 93564 CCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 |||| | | | || | || ||||||||||| ||| | ||||| || || || | Sbjct 4881 CCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 4825 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | || || |||||||| ||||| ||| || | | || || || | || || || | Sbjct 4824 CGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATCGGT 4765 Query 93681 TAGGGTTATCTTTTAGTAACGGCTC 93705 | ||||| || | || | |||||| Sbjct 4764 TGGGGTTCTCCTCGAGCAGCGGCTC 4740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556423413684640