Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq60456 93.3 3e-14 seq61437 91.5 1e-13 seq56980 87.8 1e-12 seq62514 86.0 5e-12 seq59302 84.2 2e-11 >seq60456 Length=68670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 46458 ACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 46399 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 46398 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGG 46339 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TCG 34077 | || ||| |||||| ||| || ||||| | | ||| | | || | || | ||| Sbjct 46338 GATGCCCTCCTTGTCCTGAATCTTCTGCTTGA-CGTTCTCGATCGTGTCTG-AGCTCTCG 46281 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || ||||| || || ||||| ||||| |||||| || Sbjct 46280 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 46227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| |||||||| || |||| || Sbjct 46961 AGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGG 46902 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || |||||||||||||| || | || || Sbjct 46901 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCC 46842 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| ||||| || Sbjct 46841 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTCGACTCGACTTCGAGGGT 46783 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || ||||| ||||| ||||| Sbjct 46782 GATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 46744 >seq61437 Length=178460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| |||||||| || ||||| || Sbjct 48954 AGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGG 48895 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || |||||||||||||| || | || ||| Sbjct 48894 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCC 48835 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| ||||| || Sbjct 48834 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGACTTCGAGGGT 48776 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || ||||| ||||| ||||| Sbjct 48775 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 48737 >seq56980 Length=1463 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || |||| || Sbjct 1078 AGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGG 1019 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || |||||||||||||| || | || ||| Sbjct 1018 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCC 959 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| ||||| || Sbjct 958 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGACTTCGAGGGT 900 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || || || || || ||||| ||||| |||||| Sbjct 899 GATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 860 >seq62514 Length=5924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || ||||| |||||| ||||||||| |||||||| || || Sbjct 3848 ACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 3907 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 3908 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 3967 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || || |||||| || || ||||||| | ||| | | || | || ||| Sbjct 3968 GATGCCTTCCTTGTCCTGGATCTTCTGCTTAA-CGTTCTCAATGGTGTCGCTCGACTCGA 4026 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || || || ||||| ||||| Sbjct 4027 CCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 4075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || ||||| |||||| ||||||||| |||||||| || || Sbjct 4076 ACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 4135 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || || ||||||||||| || Sbjct 4136 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 4195 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 4196 GATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGA 4254 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || ||||| ||||| ||||| Sbjct 4255 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4303 >seq59302 Length=3966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 1517 ACCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 1458 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | |||||||| || || || |||||||||||||| || Sbjct 1457 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGATCAGGAGG 1398 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 1397 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGA 1339 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || ||||| || || ||||| ||||| |||||| Sbjct 1338 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396758324154472