Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq59610 134 3e-26 >seq59610 Length=50575 Score = 134 bits (148), Expect = 3e-26 Identities = 550/857 (64%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 4779 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 4838 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || || | || Sbjct 4839 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTGAGCAAC 4895 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| | || |||||||| ||| | || | || ||||| | | ||| || || ||| Sbjct 4896 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGGCATCGTG 4955 Query 243055 ATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || || | || ||| | ||| || ||| || ||||| || || Sbjct 4956 GCCGAGAACCTCGCCGGCCG-CTTCATGAAGGAGGTCCAGGTGCCCGAGGCGCGCTGCTT 5014 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||||| || ||| ||||| || || || | || || ||||| Sbjct 5015 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGA 5074 Query 243174 CGCGCTTATTTCAGATGAACAAGA-GCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | | || ||| | || || | | ||| || || ||| ||||||||| | | | Sbjct 5075 CACC--TACGTCA-AGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 5131 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGTA- 243283 || |||| | || ||||| | ||||| ||||||| | || |||| Sbjct 5132 GCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGGTGC 5191 Query 243284 --AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | ||||| ||||| ||| ||| | | ||| || || || | || ||||| Sbjct 5192 CGAGACCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 5251 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| ||||||| ||||| ||| || ||||||| ||||||| | Sbjct 5252 CAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAG 5311 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||||| | ||||| |||||||||||||| ||| | || | || | || | Sbjct 5312 TAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACAC 5371 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | |||| ||||||| | ||| | ||| || |||||| || || || || Sbjct 5372 CATGCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGA 5431 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | || ||||||||| | ||| |||| | ||| || || ||||||||| | Sbjct 5432 GATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCC--CTCATCGGCATGAACGCC 5489 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | Sbjct 5490 GACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGC 5549 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | ||||| || | | ||||||||||| || || | || Sbjct 5550 GAGAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGC 5609 Query 243700 AAAACTAACTTCTTCGA 243716 || || ||||||||||| Sbjct 5610 AAGACCAACTTCTTCGA 5626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101992086476600