Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq60463 235 7e-57 seq43814 116 4e-21 seq43813 116 4e-21 seq59610 96.9 4e-15 >seq60463 Length=11997 Score = 235 bits (260), Expect = 7e-57 Identities = 879/1359 (65%), Gaps = 32/1359 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| |||||| || | |||||||||| Sbjct 9549 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 9608 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| || | || ||||| ||| ||| | ||| || |||||| || Sbjct 9609 AGCTTGGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 9668 Query 113717 CGTCCA-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 | | | ||||| || ||||| || || | | | | || |||||||| || | Sbjct 9669 -GCCGAGCGATCAGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTT 9727 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| || ||||| || || || ||||| ||| |||| |||| ||||| | Sbjct 9728 GTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACTGAGCCGTTGTGCGA 9787 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 ||| | | ||| | || |||||||| || || | || || || || Sbjct 9788 GACGAGCTTGTTCTTGAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAG 9847 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||| ||||| || || || || |||||| |||| | ||||| |||||||| Sbjct 9848 GTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGT 9907 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| |||||||||||||| ||||| |||| ||| || | ||| ||||| ||||||||||| Sbjct 9908 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGG 9967 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| ||| || ||| || ||||| | | ||| | ||| | | |||| Sbjct 9968 CGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCA 10027 Query 114076 GTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGC 114135 ||| | || | | | | | ||| | || |||||| | || | ||| || Sbjct 10028 GTCCCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGC 10087 Query 114136 TGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGC 114192 ||||| |||||| | |||| ||| | |||||| |||| ||| | ||| ||| || Sbjct 10088 GGGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GC 10144 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGT 114251 | ||||| ||||| || || ||||| || ||| | || || | | |||||||| Sbjct 10145 GACCAGGGCGGCGTGGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGT 10203 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 114311 || || ||| | | || | || || || || || || || || || || | || Sbjct 10204 CGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGC 10263 Query 114312 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCC 114368 | || || | || | ||| || || || || || ||| |||||| || | || Sbjct 10264 CGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGA 10320 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 | ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 10321 TGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGT 10380 Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488 ||||| || || | | || || |||| || || |||| || ||||| || | Sbjct 10381 GGTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGC 10434 Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548 |||| | ||| || ||||||| | | ||||| |||| || || || Sbjct 10435 ACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACT 10494 Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608 |||||||| | || || || || ||||| ||| || ||||||||||| ||||||| Sbjct 10495 GGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCATGT 10554 Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC--TGG 114666 | ||||| || ||||| | || |||| ||| || || ||| | || ||| || Sbjct 10555 AGGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGA 10614 Query 114667 CACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT-CTT 114725 | | |||| || || ||||||| |||||| ||| | || |||| ||| Sbjct 10615 CCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTT 10672 Query 114726 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 114785 ||||| | || | || || || || | | ||||| ||||| ||||| | || | Sbjct 10673 GCCCCAC-GAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCGC 10731 Query 114786 CCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGAC 114845 || ||| || |||||||||||||| || || ||||| || | |||||||||| || Sbjct 10732 CCATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACAGGCCGTAGAAGAGATCGCG-- 10789 Query 114846 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 10790 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 10849 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 114942 |||||| || || ||||| | |||| | ||||| || Sbjct 10850 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 Score = 116 bits (128), Expect = 4e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 11128 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 11187 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 11188 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 11247 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 11248 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 11307 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | |||||||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 11308 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 11367 Query 115310 TATTGGGGT 115318 | |||||| Sbjct 11368 TGCTGGGGT 11376 >seq43814 Length=1982 Score = 116 bits (128), Expect = 4e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | |||||||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 115310 TATTGGGGT 115318 | |||||| Sbjct 364 TGCTGGGGT 372 >seq43813 Length=6241 Score = 116 bits (128), Expect = 4e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | |||||||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 115310 TATTGGGGT 115318 | |||||| Sbjct 364 TGCTGGGGT 372 >seq59610 Length=50575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/425 (66%), Gaps = 22/425 (5%) Strand=Plus/Minus Query 125869 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 125928 |||||| || || | |||| |||| ||||||| |||| || | |||||| ||||| Sbjct 5534 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 5475 Query 125929 GAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCA 125987 |||| || ||| |||| || | ||| |||||||||| || ||||| || | | Sbjct 5474 GAGGGC-CACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGA 5416 Query 125988 CGATGGCGTGAATGGTGTCCACC--CCAGGTCTATT----GCGCAAAGTCTTGAAGAGTT 126041 ||| || ||| | | | ||| || | | ||| || | || ||| Sbjct 5415 TGATC---TGCTTGGGCACGTCGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG- 5360 Query 126042 CCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 126101 || |||||| || |||||| |||||||| ||| ||| | || || |||| | Sbjct 5359 -CA-GGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGA 5302 Query 126102 GTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGA 126161 | || ||||| || || |||||||| | |||||| || | || || || ||||||| Sbjct 5301 GGCCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGA 5242 Query 126162 AGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-------AGCGCGAC 126214 |||| ||||| || ||||| | | ||| ||||| ||||||| | ||| | Sbjct 5241 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGC-CC 5183 Query 126215 TTTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGG 126274 | ||| | ||||||||||||||| | ||||| |||| || | || ||||||| | Sbjct 5182 TCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 5123 Query 126275 ATCGC 126279 || || Sbjct 5122 ATGGC 5118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596884408614880