Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq60463 363 2e-95 seq43814 172 5e-38 seq43813 172 5e-38 >seq60463 Length=11997 Score = 363 bits (402), Expect = 2e-95 Identities = 929/1396 (67%), Gaps = 52/1396 (4%) Strand=Plus/Minus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | |||||| ||||||| |||| ||||||||||||||||||||| | Sbjct 10900 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 10841 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 10840 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCCCGCGAT 10784 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 |||||||||| || ||| | || || || || ||||| ||||| |||| | || | Sbjct 10783 CTCTTCTACGGCCTGTGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGAC 10724 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||| || ||||| ||||| ||| ||||| |||| ||| || || | || Sbjct 10723 TGGTCGCTCTTTTGCCCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTC 10664 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCT 94449 || || ||| | || ||||| | ||||| || | | ||| | || | Sbjct 10663 GAGGAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGC--CC 10606 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 |||| ||||||| ||| | || ||| | ||||| || ||||||||||| || Sbjct 10605 AGGA-GCTGTGGTTCGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTG 10547 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | |||||| | ||||| |||||||||||||||||||||||| ||| || ||| Sbjct 10546 TACAAGGATGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCG 10487 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| ||| | ||| |||| || || || |||||| | || ||||| |||||| Sbjct 10486 AACCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTG 10427 Query 94630 GGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGAT 94689 | ||| || ||| ||| ||| | ||| | || || ||| || Sbjct 10426 GCCTCGCTCGCGCTGCCCAAGTTCAT------------CAC--CAACGGCGA-GTTTGAC 10382 Query 94690 CTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGGTCTT---GAACCTGAACAGGGTAAT 94745 | || |||| | || || || ||||| ||||| |||||| |||| ||| || Sbjct 10381 CACAAGAAGCT---GCACGACGTCGTGAAGG-TGGTCACCAAGAACCTCAACAAGGTGAT 10326 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| |||| ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 10325 CGACATCAACTACTACCCCGTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCAT 10266 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 |||||| || || ||||| | || |||| | |||| |||| | || | || Sbjct 10265 CGGCATTGGAGTGCAGGGCCTGGCCGACGTCTTCATGATCCTGCGCCACCCGTGGGAGAG 10206 Query 94866 TGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGA 94924 | ||| || ||| | | | | ||| ||||| | ||| || ||| ||| || Sbjct 10205 CGACGAGGCCCGCGAGCTCAACCGCGC-CATCTTCGAGACCATCTACCACGCCGCCCTGG 10147 Query 94925 AACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 || | | | || ||| ||| | ||| | || || | | | || ||| Sbjct 10146 TCGCCTCGAACGAGCTCGCGCAGGTCG-AGGGCAC-CTACCAGAC-CTATGAG-GGCTCG 10091 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | |||||| | ||| |||||||||||| || ||| |||| || Sbjct 10090 CCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGAGTCGTGCCGTCGGACAGGTGG 10031 Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| | | | | |||||| || ||| |||| || ||| Sbjct 10030 GACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTG 9971 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || ||||||||||||||||| || |||||||||| ||||||||||||| || || ||| Sbjct 9970 GCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCC 9911 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| | |||| | | || | |||||||| || ||| ||||| ||||| || Sbjct 9910 TACACGACCAACATCTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAG 9851 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG--GGTGACAAGGTCAAGAACCAAC 95281 ||||| || || || ||| | | || | ||| | | | | |||||||| | | Sbjct 9850 CACCTTCTGCGCGAGCTGCAGCAGCGCGGCCTCTGGTCGCCGGC--GCTCAAGAACAAGC 9793 Query 95282 TGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCG 95340 | | | ||| ||||||||| |||||| |||| | | || || || ||||||||| | Sbjct 9792 T-CGTCTCGCACAACGGCTCAGTCCAGCGCATCGAGGAGATCCCCGACGACATCAAGAAG 9734 Query 95341 CTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 || |||||||||||||||||| ||||||||||||| || ||||| || || | ||| Sbjct 9733 CTGTACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCTGATCGC 9674 Query 95401 GGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CG 95458 | ||| |||| |||||| |||| ||||||| ||| || Sbjct 9673 TCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTCG 9616 Query 95459 GAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATT 95518 || | || || ||| ||||||| ||| | ||||| ||||||||||| ||||| | Sbjct 9615 CCAAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACT 9556 Query 95519 ATTTGCGAACCAGGCC 95534 | | || ||| |||| Sbjct 9555 ACCTTCGCACCCGGCC 9540 Score = 172 bits (190), Expect = 5e-38 Identities = 299/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | | || |||| | | | Sbjct 11441 TACTTCGGCTTCAAGACCCTCGAGCGCTCGTACCTCTTCAGGGTCGACGGCAAGATCGTC 11382 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| ||| |||| | ||| || |||| || Sbjct 11381 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCC 11322 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 11321 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 11262 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || |||||| || ||| |||| ||||| |||||| | || | ||| Sbjct 11261 CTCTTCAACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 11202 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||| | ||||||| | ||||| |||||| || | Sbjct 11201 GAGGACTCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCG 11142 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 11141 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 11082 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 11081 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 11022 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 11021 TACGTCGACCAAGGT 11007 >seq43814 Length=1982 Score = 172 bits (190), Expect = 5e-38 Identities = 299/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | | || |||| | | | Sbjct 437 TACTTCGGCTTCAAGACCCTCGAGCGCTCGTACCTCTTCAGGGTCGACGGCAAGATCGTC 378 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| ||| |||| | ||| || |||| || Sbjct 377 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCC 318 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 317 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 258 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || |||||| || ||| |||| ||||| |||||| | || | ||| Sbjct 257 CTCTTCAACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 198 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||| | ||||||| | ||||| |||||| || | Sbjct 197 GAGGACTCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCG 138 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 137 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 78 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 77 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 18 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 17 TACGTCGACCAAGGT 3 >seq43813 Length=6241 Score = 172 bits (190), Expect = 5e-38 Identities = 299/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | | || |||| | | | Sbjct 437 TACTTCGGCTTCAAGACCCTCGAGCGCTCGTACCTCTTCAGGGTCGACGGCAAGATCGTC 378 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| ||| |||| | ||| || |||| || Sbjct 377 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCC 318 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 317 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 258 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || |||||| || ||| |||| ||||| |||||| | || | ||| Sbjct 257 CTCTTCAACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 198 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||| | ||||||| | ||||| |||||| || | Sbjct 197 GAGGACTCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCG 138 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 137 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 78 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 77 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 18 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 17 TACGTCGACCAAGGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494334619662560