Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq62514 95.1 1e-14 seq61614 87.8 2e-12 seq60456 86.0 6e-12 >seq62514 Length=5924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || ||||| ||||| || ||||| ||||| || || ||| Sbjct 3846 ATACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 3905 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || ||||||||||| Sbjct 3906 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 3965 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || || || | || | || | ||||||| ||||| Sbjct 3966 GGGATGCCTTCCTTGTCCTGGATCTTCTGCTT-AACGTTCTCAATGGTGTCGCTCGACTC 4024 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||||| ||| || || || || || || || || || ||||| Sbjct 4025 GACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 4075 >seq61614 Length=59386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| || || || || Sbjct 2295 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCG 2354 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || |||||||||||||| |||||||| || || || Sbjct 2355 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGG 2414 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | || | || | ||||||| |||||||| |||||||||| ||| || Sbjct 2415 ATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTT 2473 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 2474 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 2503 >seq60456 Length=68670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 46973 ATGCCACCGCGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 46914 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || ||||| || || Sbjct 46913 GCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGG 46854 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || || || | || | || | ||||||| ||||| Sbjct 46853 GGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTCGACTC 46795 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | ||| |||||||| || || || || || || ||||| Sbjct 46794 GACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 46744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451648174086560