Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq60463 244 1e-59 seq43814 107 2e-18 seq43813 107 2e-18 seq59610 95.1 1e-14 >seq60463 Length=11997 Score = 244 bits (270), Expect = 1e-59 Identities = 881/1359 (65%), Gaps = 32/1359 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 9549 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 9608 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| || | || ||||| ||| ||| | ||| || |||||| || Sbjct 9609 AGCTTGGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 9668 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||||| || ||||| || || | | | | || |||||||| || || Sbjct 9669 GCCGAGCGATCAGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 9728 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| || || || ||||| ||| |||| |||| ||||| | | Sbjct 9729 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACTGAGCCGTTGTGCGAG 9788 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 || | | ||| | || |||||||| || || || || || || ||| Sbjct 9789 ACGAGCTTGTTCTTGAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGG 9848 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 |||| ||||| || || || || |||||| |||| | ||||||||||||||| Sbjct 9849 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 9908 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 9909 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 9968 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| ||| || |||||| ||||| | ||| | ||| | | ||||| Sbjct 9969 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 10028 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | || | | | | | |||| | || |||||| | || | |||||| Sbjct 10029 TCCCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 10088 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154 ||||| |||||| | |||| || | |||||| |||| ||| | ||| ||| || Sbjct 10089 GGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GCG 10145 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 116213 | ||||| ||||| || || ||||| || ||| | || || | | ||||||||| Sbjct 10146 ACCAGGGCGGCGTGGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTC 10204 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | || ||| | | || | || || || || || || || || || || | ||| Sbjct 10205 GCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGCC 10264 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCT 116330 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 10265 GATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGAT 10321 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 10322 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTG 10381 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 ||||| || || | | || || |||| || || |||| || ||||| || || Sbjct 10382 GTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 10435 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 ||| | ||| || ||||||| | | ||||| |||| || || || Sbjct 10436 CACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 10495 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 |||||||| | || || || || ||||| ||| || ||||||||||| ||||| || Sbjct 10496 GATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCATGTA 10555 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC--TGGC 116628 ||||| || ||||| | || |||| ||| || || ||| | || ||| || | Sbjct 10556 GGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGAC 10615 Query 116629 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT-CTTC 116687 | |||| || || ||||||| |||||| ||| |||| |||| ||| Sbjct 10616 CACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTG 10673 Query 116688 ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACC 116747 ||||| | || | || || || || | | || || ||||| ||||| | || || Sbjct 10674 CCCCAC-GAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 10732 Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGAC 116806 | ||| || |||||||||||||| || || ||||| || |||| |||||||||| || Sbjct 10733 CATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACAG-GCCGTAGAAGAGATCGCG-- 10789 Query 116807 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 10790 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 10849 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 |||||| || || ||||| | |||| | |||||||| Sbjct 10850 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 Score = 107 bits (118), Expect = 2e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 11128 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 11187 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 11188 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 11247 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 11248 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 11307 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 11308 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 11367 Query 117271 TATTGGGGT 117279 | |||||| Sbjct 11368 TGCTGGGGT 11376 >seq43814 Length=1982 Score = 107 bits (118), Expect = 2e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 117271 TATTGGGGT 117279 | |||||| Sbjct 364 TGCTGGGGT 372 >seq43813 Length=6241 Score = 107 bits (118), Expect = 2e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | || |||| | |||| | ||||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 117271 TATTGGGGT 117279 | |||||| Sbjct 364 TGCTGGGGT 372 >seq59610 Length=50575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| |||||||| ||| ||| | || || |||| || || Sbjct 5356 GCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCG 5297 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||| | |||||| || | || || ||| ||||||||||| Sbjct 5296 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATG 5237 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGA-----CTTTGTA 127693 ||||| || ||||| | | || ||||||||||||| ||| | || | Sbjct 5236 CCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTCCTTG 5177 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | | ||||||||||||||| | ||||| |||| || | || ||||||| ||| || Sbjct 5176 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 5118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613025320769760