Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq60463 188 1e-42 seq59610 168 1e-36 >seq60463 Length=11997 Score = 188 bits (208), Expect = 1e-42 Identities = 345/493 (70%), Gaps = 12/493 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| || ||||| |||| |||| | | | || ||||||||||||||| Sbjct 9510 TCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTC 9569 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 9570 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCGAACG-AGGGCTC 9628 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || ||||| |||||||| Sbjct 9629 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCAGCGGCCAT 9688 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGT-GT 204079 | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || ||| || Sbjct 9689 GTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATGTCGT 9747 Query 204080 TGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | || |||| | | | | || || |||||||||| | | || | || | Sbjct 9748 CGGGG---ATCTCCTCGATGCGCTGGACTGAGCCGTTGTGCGAGACGAGCTTGTTCTTGA 9804 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | || | ||| | | || ||| | |||||| |||| ||||| ||||| || Sbjct 9805 GCGCCGGCGACCAGA-GGCCGCGCTGCTGCAGCTCGCGCAGAAGGTGCTCGTTGACGACG 9863 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||||| |||| || | | |||||| | | |||| | ||| | || || || | Sbjct 9864 GTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCAC 9923 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || ||| Sbjct 9924 TCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAG 9983 Query 204317 TTGCGCACACCGT 204329 ||||||| ||||| Sbjct 9984 TTGCGCAGACCGT 9996 >seq59610 Length=50575 Score = 168 bits (186), Expect = 1e-36 Identities = 546/840 (65%), Gaps = 22/840 (3%) Strand=Plus/Minus Query 159652 CTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTT 159711 |||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| | Sbjct 5627 CTCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGT 5568 Query 159712 CACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGAT 159771 | || ||| ||||| | ||||| || || || | | ||| || || || ||||| Sbjct 5567 CTGGTTGTAGTGCTTCTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGAT 5508 Query 159772 GTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAG 159831 ||| ||||| | || ||| || || | || ||||| |||| || | || Sbjct 5507 GTACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGCAGCGACTCGGTCAC 5448 Query 159832 AAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCCG 159890 || ||||||||||||||||| || ||| | |||||| | ||||| || | | Sbjct 5447 GAATTCCTTCTCAATCTCGACGGCCTCGAGGATGATCTGCTTGGGCACGTCGGT-CGAGG 5389 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | ||| || | |||||||| |||||||||||||| || |||| Sbjct 5388 GCTTGTTGACGAGCATGGTGT------AGAGGAGGCAGGCAAAGTCGCAGTGGAGGCCCT 5335 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| | | |||||| ||||| | || ||| |||| Sbjct 5334 CGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATCAGGCCGCGCTTCTTGA 5275 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | Sbjct 5274 GCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCG 5216 Query 160067 ACGAGCCTCTCACCAAAAG---AGGCGTTGGTGTC---ATGGGTCCACCTTTTGGCCCAT 160120 | ||| | ||| |||| | ||| | || | | ||||| | | ||||| Sbjct 5215 ATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTCCTTGTTGATCCACTTCATCGCCCAG 5156 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 || |||||||| || | |||| | ||||| |||| || | | ||||| ||| Sbjct 5155 TCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCG 5096 Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240 ||||||| || | || || ||||||||| || | ||| | || ||| Sbjct 5095 ACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCG 5036 Query 160241 ATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAAC 160300 ||||| || || ||| |||||| | |||||| | ||| ||||||| |||| Sbjct 5035 ATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGGACCTCCTTCATGAAG 4976 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | | || || | || | |||||| |||||| ||||| |||| ||||| Sbjct 4975 CGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCTGGCCGCGAAGAAGGCCAGGACGTGC 4916 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 |||||| || |||||||| ||| | || | ||||||||| ||| ||| | | Sbjct 4915 TTGATGAAGTGCCTCTCGTCGTTGCTCAG---CGATTCCCAGTGCTTCATGTCGGAGCTC 4859 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 | ||| || || || || |||| || |||| || | |||||||| |||||||| Sbjct 4858 AGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794530645348160