Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq62514 84.2 2e-11 seq60456 82.4 5e-11 >seq62514 Length=5924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| |||| ||| || || | ||| | ||| || || || || || || |||||| Sbjct 3849 CCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3908 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || || | || || ||| | || || | ||||||||| |||| ||| Sbjct 3909 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 3968 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT-TCCAC 39671 | |||||| ||||| || || || |||| || | | ||||| || | || || Sbjct 3969 ATGCCTTCCTTGTCCTGGATCTTCTGCTTAACGTTCTCAATGGTGTC-GCTCGACTCGAC 4027 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || |||||||| | || || |||||||||||||| Sbjct 4028 CTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 4075 >seq60456 Length=68670 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| |||| ||| || || | || | ||| ||||| || || || || ||||| Sbjct 47198 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCG 47139 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || || | || || ||| | || || | |||||||||||| | || Sbjct 47138 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGG 47079 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || || || || | || | | ||||||| ||| || || Sbjct 47078 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCTGAGCTCTCGACT 47019 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| || || ||||| | || || ||||||||||||||| Sbjct 47018 TCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 46971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347103579583988