Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq60463 159 4e-34 seq46804 113 6e-20 seq59610 104 3e-17 >seq60463 Length=11997 Score = 159 bits (176), Expect = 4e-34 Identities = 652/1013 (64%), Gaps = 30/1013 (3%) Strand=Plus/Minus Query 111987 CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 |||||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 10888 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 10829 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 10828 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 10769 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 |||||||| ||||||||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 10768 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 10709 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || || | || |||||||| | || | ||| ||||||| || | ||| Sbjct 10708 CCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 10649 Query 112227 AAGTACGAGGAAGAAAGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 112282 |||||| | || | || ||| | ||| ||| | || ||| || ||||| Sbjct 10648 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 10593 Query 112283 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTG 112342 || || ||| ||||||| | |||||| || || || || ||||| ||||| || ||||| Sbjct 10592 CGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGATGCCTG 10533 Query 112343 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGA 112402 ||| ||| || || || | | || ||| || || ||||| || || || Sbjct 10532 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 10473 Query 112403 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 112462 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 10472 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 10413 Query 112463 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 112522 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 10412 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACAAGAAGCTGCACGACGTCGT 10359 Query 112523 GAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 112579 ||| ||||| || ||||| |||| || || || | || | |||||||| || Sbjct 10358 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 10299 Query 112580 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGC 112639 | || || || || || ||| | ||| | || || || | || || || || || || Sbjct 10298 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATTGGAGTGCAGGGCCTGGC 10242 Query 112640 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 112698 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 10241 CGACGTCTTCATGATCCTGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 10182 Query 112699 CGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAG 112755 ||| || || ||||| || || |||||||| || | || ||| ||| | || Sbjct 10181 CGC-CATCTTCGAGACCATCTACCACGCCGCCCTGGTCGC---CTCGAACGAGCTCGCGC 10126 Query 112756 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAA 112814 |||| || || | || | |||| |||||| || || || || |||||| ||| || Sbjct 10125 AGGTCGAGGGCACCTACCAGACCTATGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAG 10067 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGC 112874 || | |||| || | | | | | ||||||| | | ||| | | Sbjct 10066 CCCGACCTCTGGGGAGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAAC 10007 Query 112875 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 112934 ||| || | ||||| || ||| || | |||| || ||||| || ||||| ||| Sbjct 10006 ATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACC 9947 Query 112935 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 9946 TCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 9894 >seq46804 Length=3119 Score = 113 bits (124), Expect = 6e-20 Identities = 189/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| || | ||||| || |||||| || || || | ||| ||| Sbjct 2552 CTCATCGACACCTACGTCAAGGACACCGCCGAGAAGGCCCACCTGTTCAACGCCGCCCAG 2493 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 102166 || | || | ||| | ||||| || || |||||| | |||||| | | || |||| Sbjct 2492 ACCATCCCGTCTATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCGCCACCAAAG-- 2435 Query 102167 GCGTT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 102222 |||| |||||| |||| || ||| ||| || |||||||| |||||| ||| Sbjct 2434 GCGTAGAGACCTTTGGCCAGCGCCTGGTCGGATTCGCCGCCGTTGAGGGCATCTTCATCT 2375 Query 102223 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 | || || |||||| | || | |||||||||||||| || |||||||| || || || Sbjct 2374 CCGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCT 2315 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || |||||||||| ||| ||| ||||| || Sbjct 2314 TCGCCAACGAGCTCATCAGTCGCGACGAAGG 2284 >seq59610 Length=50575 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||||| ||| ||| ||| || || ||||| ||||||||||| || || Sbjct 5197 CCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 5256 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | |||||||||||||| || || ||||| || ||| |||| |||| Sbjct 5257 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 5316 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || | ||| || |||||||| |||||| || ||||| Sbjct 5317 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620254837881920