Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq60463 183 4e-41 seq46804 91.5 2e-13 seq59610 89.7 6e-13 >seq60463 Length=11997 Score = 183 bits (202), Expect = 4e-41 Identities = 879/1373 (64%), Gaps = 52/1373 (4%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 |||||| || ||||| || || ||||| || ||| ||| ||||| | ||||| || Sbjct 9548 GCGAAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 9604 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| |||| | | || ||| || || | | ||| | |||||| ||| |||| Sbjct 9605 GGTGAGCTTGGCGAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 9663 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | |||||||| |||||||||||||| || | | | | | |||| || Sbjct 9664 TGTAG-GCCGAGCGATCAGCGGCCATGTCGATGATGACGCGCTGCGGGAGCT-CCCACAC 9721 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||||| |||||||| || ||||| || ||| ||||| || | ||||| Sbjct 9722 GGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACTGAGCCGTT 9781 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || | | ||| | | | ||||||||| ||| || | || ||| Sbjct 9782 GTGCGAGACGAGCTTGTTCTTGAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCG 9841 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| |||| |||||| ||| || || || || || |||| ||| ||||||||| Sbjct 9842 CAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTT 9901 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 ||||||||||| || || ||||| |||||||| ||||| || | || || || ||||| Sbjct 9902 GGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGG 9961 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCGCTCACGCATT 109878 |||||| |||| ||| || ||| || ||||| | | | | | | | ||| Sbjct 9962 CATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGAT----GTTGGCGCGGA 10017 Query 109879 GCGT--CCCAATCATAAC-GACC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTG 109934 |||| |||| || | | | || || | | | | |||| | || || || Sbjct 10018 GCGTGGCCCAGTCCCACCTGTCCGAC--------GGCACGACTCCCCAGAGGTCGGGCTG 10069 Query 109935 AAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGC 109994 || |||| | || || || |||| | ||| ||| | ||||| |||| || Sbjct 10070 GAGCTTGCCCTTGGACGCGGGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGC 10129 Query 109995 CAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 | |||| || || | || || || || || || ||||| || || | || | | Sbjct 10130 GAGCTCGTTCGAGGCGACCAGGGCGGCGTGGTAGATGGTCTCGAAGAT-GGCGCGGT--T 10186 Query 110055 GAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAG 110111 ||| ||| | ||| || | || | || | | | || || || || || || Sbjct 10187 GAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAG 10246 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||| || || | || ||||| | || |||||| ||| || || || Sbjct 10247 GCCCTGCACTCCAATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCAC 10306 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||| ||| ||||| ||||| || || |||| || || Sbjct 10307 GGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTC 10366 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 || || || | || || ||| ||| | || ||| | ||||| || || | Sbjct 10367 GTGCAGCTTCTTGTGGTCAAAC----TCG--CCGTTGGTGATGAACTTGGGCAGCGCGAG 10420 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTA 110349 || || || |||||||| | |||||| | || ||||| | | | ||||| Sbjct 10421 CGAGGCCAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTGGACGACCTCCGTG 10478 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || || ||| || | || || ||| || || ||| |||||| ||| Sbjct 10479 CACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCA 10538 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||||| || || || || || |||| |||| ||| ||||| ||| Sbjct 10539 TCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCAC 10598 Query 110470 ACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || ||| ||| | ||| ||| | || |||| |||||| |||| Sbjct 10599 AGCTCCTGGGCCTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACT 10656 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 ||||| || |||| || || ||| | ||||| || | || ||| || |||| Sbjct 10657 TCTCCTCGAACTCCTTGCCCCACGAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGA 10716 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| | || ||| ||| || | ||||||||| || || |||||||||| |||| Sbjct 10717 GCGACCAGTCGCCGCCCATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACA-GGCCG 10775 Query 110648 -AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||| || || ||| || ||| || | || ||||| || || | ||| Sbjct 10776 TAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAG 10835 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || | ||| |||| |||||| || ||||| |||| |||| | ||||| || Sbjct 10836 TCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 >seq46804 Length=3119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || ||| ||||||||| || |||| || || |||||||| || | ||| Sbjct 2284 CCTTCGTCGCGACTGATGAGCTCGTTGGCGAAGGCCAGGCCGGGCATGAGGCCGCGCTTC 2343 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || | |||||||||||| || |||||| Sbjct 2344 TTGAGCCAGAAGATGGAGCAGAACGACCCGGAGATGAAGATGCCCTCAACGGCGGCGAAT 2403 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC-------TTGTCGAACCACTTGAGAGCCCA 119686 ||| || |||| || ||||||| || || ||| ||||||||||||||| Sbjct 2404 CCGACCAGGCGCT-GGCCAAAGGTCTCTACGCCTTTGGTGGCGATCCACTTGAGAGCCCA 2462 Query 119687 GTTGGCCTT 119695 || |||||| Sbjct 2463 GTCGGCCTT 2471 >seq59610 Length=50575 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/210 (70%), Gaps = 9/210 (4%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||| | ||| ||||||||| || || Sbjct 5357 GGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCC 5298 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || | ||||| ||||| ||||||| || || || || || |||||||| Sbjct 5297 GGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGAT 5238 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGA--------CTT 119665 |||||| || |||||| ||| || ||||| ||||| | ||| | ||| Sbjct 5237 GCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTCCTT 5178 Query 119666 GTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 || || |||||| | ||||||| |||||| Sbjct 5177 GTTGATCCACTTCATCGCCCAGTCGGCCTT 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588513388800800