Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq60463 136 5e-27 seq43814 105 8e-18 seq43813 105 8e-18 >seq60463 Length=11997 Score = 136 bits (150), Expect = 5e-27 Identities = 643/1009 (64%), Gaps = 22/1009 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| ||||||||||| |||||||| || || || |||| ||| || | ||| ||| Sbjct 9894 TAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAG 9953 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || |||| | || ||| || ||||| | | |||| | Sbjct 9954 GCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCG 10013 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGC 106114 ||| ||||||| | || | | | || |||| | || || ||| Sbjct 10014 CGGAGCGTGGCCCAGTCCCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGC 10073 Query 106115 ACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAAT 106174 || | ||||| ||| || |||||| | |||| |||| || | | | | || | Sbjct 10074 TTGCCCTTGGACGCGGGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGC 10133 Query 106175 TCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA-TTCAT 106230 || | ||| | |||||| ||||| || ||||| || ||||| | || || | Sbjct 10134 TC---GTTCGAGGCGACCAGGGCGGCGTGGTAGATGGTCTCGAAGATG-GCGCGGTTGAG 10189 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 ||| ||| || || || | | || ||| | || || || || || || || Sbjct 10190 CTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCC 10249 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347 || || || | || || || ||||| ||||| || || || || || ||| || Sbjct 10250 CTGCACTCCAATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCAC 10306 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 ||| || | || |||| || || ||| || || ||||| || | ||| || || Sbjct 10307 GGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTC 10366 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 106467 || || || | | ||||| || || | | || || |||| || || |||| Sbjct 10367 GTGCAGCTTCTTGTGGTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAG 10420 Query 106468 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 106527 || |||| ||||| || ||| ||| || ||||||| | | || || || Sbjct 10421 CGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCA 10480 Query 106528 CAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATC 106587 || ||| || || || || || | | || ||||| ||| |||||| ||||| Sbjct 10481 CAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATC 10540 Query 106588 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 |||||| |||||||||||||| || ||||| |||| |||| ||| || || ||||| Sbjct 10541 CTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAG 10600 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || ||| || | | | || || |||||| |||||| ||| | Sbjct 10601 CTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTC 10660 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || ||||||| ||| || ||| | ||||| || || | || || || || || || Sbjct 10661 CTCGAACTCCTTGCCCCACGAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGA 10720 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | || ||| ||| || ||||||||||| || || |||||||||||| | || Sbjct 10721 CCAGTCGCCGCCCATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACAGGCCGTAGAA 10780 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCA 106886 |||||| | || ||| || | || ||||| || | | || ||||| || | Sbjct 10781 GAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTCAGGTCGAGGAAGTCAA 10839 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935 ||| ||||||||||| ||||| || |||| |||| || ||||| || Sbjct 10840 AGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 Score = 105 bits (116), Expect = 8e-18 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 11128 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 11187 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 11188 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 11247 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 11248 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 11307 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | |||| |||||| ||||| | |||| Sbjct 11308 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 11367 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 107344 | |||||| || | || |||| |||| || |||||| Sbjct 11368 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGA 11407 >seq43814 Length=1982 Score = 105 bits (116), Expect = 8e-18 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | |||| |||||| ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 107344 | |||||| || | || |||| |||| || |||||| Sbjct 364 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGA 403 >seq43813 Length=6241 Score = 105 bits (116), Expect = 8e-18 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | |||| |||||| ||||| | |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 107344 | |||||| || | || |||| |||| || |||||| Sbjct 364 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGA 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589517399580640