Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq59610 210 4e-49 seq60463 165 2e-35 seq46804 114 2e-20 seq43814 100 5e-16 seq43813 100 5e-16 >seq59610 Length=50575 Score = 210 bits (232), Expect = 4e-49 Identities = 397/579 (69%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 4800 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 4859 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | |||||| | |||| | | || ||| |||||| ||| || ||||| || Sbjct 4860 AGCTCCGACATGAAGCACTGGGAATCGCTGAGCAACGACGAGAGGCACTTCATCAAGCAC 4919 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| ||||| || ||| || || || ||| |||||| || || | ||| Sbjct 4920 GTCCTGGCCTTCTTCGCGGCCAGCGACGGCATCGTGGCCGAGAACCTCGCCGGCCGCTTC 4979 Query 25657 ACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 | | ||| || ||| ||| ||||| || |||||||| ||||| || |||||| Sbjct 4980 ATGAAGGAGGTCCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAAATCGCCATC 5036 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| | ||| || || || ||| | | ||| | Sbjct 5037 GAGAACATCCACTCCGAGATGTACTC---GCTCCTCATCGACACCTACGTCAAGGACCAC 5093 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | ||||| || || || || | ||||||||| | | ||| |||||| |||||| Sbjct 5094 GTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGGCC 5153 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT------ACGTTTGGCGAGCGGCTG 25884 ||||| |||||||||||||||| || ||| | || |||| |||||| || Sbjct 5154 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCGGTGCCGAGACCTTTGCCGAGCGCCTC 5213 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTG 25943 | | || || || || ||||||||||| ||| ||| || ||| |||||||||| Sbjct 5214 ATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCT-CCATCTTCTG 5272 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||||| || || |||||||| || ||| |||||| | |||||| | || Sbjct 5273 GCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGA 5332 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| |||||| | || ||||||||||| |||||||| Sbjct 5333 CGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACAC 5371 >seq60463 Length=11997 Score = 165 bits (182), Expect = 2e-35 Identities = 312/452 (69%), Gaps = 24/452 (5%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGGAG 221477 |||||| ||||||||||||||||| ||||| |||||| ||| || ||||| Sbjct 10148 CAGGGCGGCGTGGTAGATGGTCTCGAAGATGGCGCGGTTGAG-CTCGCGGGCCTCGTCGC 10206 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | || ||||| ||| |||||||||||||| ||||| ||||| || |||| Sbjct 10207 TCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGCCGA 10266 Query 221538 TGGGCCTGTGTCTCCTGTTGGA--AGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||||||||| | | |||| || |||| || || |||||||| || |||||| ||| Sbjct 10267 TGGGCCTGTGGCGCATGTTCGAGTTGCGG--GCCTCGGGCACGGGGTAGTAGTTGATGTC 10324 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||||| |||||||||||| |||| || || || || ||| |||||||| ||| | Sbjct 10325 GATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTGGT- 10383 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | ||||||||| | ||| | || | |||| | || | ||| Sbjct 10384 -----CAAACTCGCCG--TTGGTGATGAACTTGGGC---AGCG---CGAGCGA----GGC 10426 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 |||||| ||||||||||||||||| || ||||| | || ||| || || ||||| Sbjct 10427 CAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTT 10486 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 ||| |||||| || ||||| | || || ||||||| ||| || |||||||| Sbjct 10487 CGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTA 10546 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 ||||| |||| ||| ||||| | ||||| Sbjct 10547 CAGCATGTAGGGCGTGCCGGTCTCGATCTGAG 10578 Score = 100 bits (110), Expect = 5e-16 Identities = 227/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | ||| || |||||| || || |||||| Sbjct 11127 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCC 11186 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | || Sbjct 11187 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGT 11246 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 11247 TCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 11305 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | | ||| | |||| || Sbjct 11306 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCA 11365 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || |||||||| || | Sbjct 11366 TGTGCTGGGGTCGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTACGAGCGCTCGA 11422 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| || |||||| || || ||||| Sbjct 11423 GGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTC 11456 >seq46804 Length=3119 Score = 114 bits (126), Expect = 2e-20 Identities = 230/336 (68%), Gaps = 12/336 (4%) Strand=Plus/Minus Query 25683 CAAGTGTTTCTACGGTTT-CCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCA 25741 ||| || ||||| || |||||| ||||||||||| | ||| ||| |||| | Sbjct 2614 CAACTGCTTCTATGGNNNNCCAGATCGCCATCGAAAACATCCACAGCGAGATGTACTC-- 2557 Query 25742 AGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCA 25798 ||| || || || ||| | | ||| |||||||| | | ||||| ||| Sbjct 2556 -GCTGCTCATCGACACCTACGTCAAGGACACCGCCGAGAAGGCCCACCTGTTCAACGCCG 2498 Query 25799 TCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCC 25858 | || ||| || ||||||| |||||| ||||| | ||||||||| || | Sbjct 2497 CCCAGACCATCCCGTCTATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCGCCACCA 2438 Query 25859 AGAGCGCT---ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTT 25915 | ||| || |||||| |||| ||||| | || || || || ||||||||||| Sbjct 2437 AAGGCGTAGAGACCTTTGGCCAGCGCCTGGTCGGATTCGCCGCCGTTGAGGGCATCTTCA 2378 Query 25916 TCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 || ||| ||||| ||| ||||||||||||||||| || || ||||||||| ||| Sbjct 2377 TCTCCGGGTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTG 2319 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 ||| |||||||||||||||| | ||||| ||| Sbjct 2318 GCCTTCGCCAACGAGCTCATCAGTCGCGACGAAGGT 2283 >seq43814 Length=1982 Score = 100 bits (110), Expect = 5e-16 Identities = 227/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | ||| || |||||| || || |||||| Sbjct 123 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCC 182 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | || Sbjct 183 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGT 242 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 243 TCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 301 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | | ||| | |||| || Sbjct 302 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCA 361 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || |||||||| || | Sbjct 362 TGTGCTGGGGTCGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTACGAGCGCTCGA 418 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| || |||||| || || ||||| Sbjct 419 GGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTC 452 >seq43813 Length=6241 Score = 100 bits (110), Expect = 5e-16 Identities = 227/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | ||| || |||||| || || |||||| Sbjct 123 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCC 182 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | || Sbjct 183 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGT 242 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 243 TCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 301 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | | ||| | |||| || Sbjct 302 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCA 361 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || |||||||| || | Sbjct 362 TGTGCTGGGGTCGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTACGAGCGCTCGA 418 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| || |||||| || || ||||| Sbjct 419 GGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTC 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928115238851840