Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq62070 93.3 3e-13 seq62166 86.0 4e-11 seq60456 86.0 4e-11 seq60320 86.0 4e-11 >seq62070 Length=23631 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 878087 AATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAGCATCT 878146 || ||||| || || || ||||| | | || || |||||||| || || || || Sbjct 8894 AACGAACTGATCCCGGACATTCCGTTCGCGCTCAAGGCCAAGATGGCCTACCAGGCCTCC 8953 Query 878147 AAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAAT 878206 || || ||||| ||| | || || || ||||| ||||| | ||||||||||| || || Sbjct 8954 AAGGGCATGCACTTCCTCCATTCGTCGGGCATCGTCCACCGCGATCTCAAGTCGCTCAAC 9013 Query 878207 CTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGACAAAGTT 878262 || || || || | || ||||| || || ||||| || |||||| | || ||||| Sbjct 9014 CTGCTGCTCGACGCCAAGTGGAACGTCAAGGTGAGCGACTTTGGTCTCACCAAGTT 9069 >seq62166 Length=64926 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||||||| || || || | ||||| ||||| ||| | ||||| || ||||| || || Sbjct 5896 AAGATGGTCTACCAGGCGGCCAAAGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCAC 5955 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| || || || || || ||| | || ||||| || || ||| ||| Sbjct 5956 CGCGATCTCAAGTCGCTCAACCTCCTGCTCGATGCCAAGTGGAACGTCAAGGTGTCTGAC 6015 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| | || ||||| Sbjct 6016 TTTGGTCTCACCAAGTT 6032 >seq60456 Length=68670 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| || || || || || ||||| | || || || || || || Sbjct 47192 CGCAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGCGTG 47133 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||| || || || || ||||| || ||||||||||| || ||| Sbjct 47132 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCT 47073 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 |||||||| || ||||| || || || || || || || | | | | | ||| || Sbjct 47072 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCTGAGCTCTCGA-CTTCGAG 47014 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||| || || || || ||||| ||||| || || Sbjct 47013 GGTAATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 46975 >seq60320 Length=6135 Score = 86.0 bits (94), Expect = 4e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || |||||||||||||| || || || ||||| || ||| Sbjct 3074 AAGGTCGCCTACCAAGCCTCCAAGGGAATGCATTTCTTGCATTCCTCTGGCATCGTGCAT 3133 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAA 878235 | ||||||||||| || || || || || || || || |||||||| || Sbjct 3134 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAATGTCAA 3183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265483859079728