Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq60463 96.9 4e-15 seq43814 96.9 4e-15 seq43813 96.9 4e-15 >seq60463 Length=11997 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 11375 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 11316 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 11315 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 11256 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| |||||||| || ||| ||||||||| Sbjct 11255 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 11196 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 11195 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 11136 Query 75452 GGTATTGG 75459 || || || Sbjct 11135 GGCATCGG 11128 >seq43814 Length=1982 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| |||||||| || ||| ||||||||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 75452 GGTATTGG 75459 || || || Sbjct 131 GGCATCGG 124 >seq43813 Length=6241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| |||||||| || ||| ||||||||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 75452 GGTATTGG 75459 || || || Sbjct 131 GGCATCGG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596101024407680