Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq58732 118 3e-21 seq43500 118 3e-21 seq42692 118 3e-21 >seq58732 Length=11942 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 11187 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 11128 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 11127 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCG 11068 Query 302713 ACGAAACCACGCGCCTC-GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| ||| |||| || |||| ||| |||||| ||||| || | || Sbjct 11067 ACGAAGCCACGCGACTCCGGGCCAAA-GTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 11009 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 11008 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 10949 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 10948 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 10904 >seq43500 Length=4327 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 3572 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 3513 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 3512 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCG 3453 Query 302713 ACGAAACCACGCGCCTC-GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| ||| |||| || |||| ||| |||||| ||||| || | || Sbjct 3452 ACGAAGCCACGCGACTCCGGGCCAAA-GTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 3394 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 3393 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 3334 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 3333 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 3289 >seq42692 Length=4085 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 972 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 1031 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 1032 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCG 1091 Query 302713 ACGAAACCACGCGCCT-CGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| || ||||| || |||| ||| |||||| ||||| || | || Sbjct 1092 ACGAAGCCACGCGACTCCGGGCCAA-AGTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 1150 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 1151 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 1210 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 1211 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470632659887732