Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq56789 86.0 5e-12 seq59876 82.4 6e-11 >seq56789 Length=1379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 || ||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 478 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 537 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||| | ||||||| | || | ||||||||| Sbjct 538 CACTTCAACCCCTTCGGCAAGAAGCACGGCGGACCCGACGATGAGGAGCGTCACGTCGGC 597 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 598 GATCTCGGCAACGTC 612 >seq59876 Length=30768 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 || ||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 20507 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 20448 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||| | ||||| | | || | ||||||||| Sbjct 20447 CACTTCAACCCCTTCGGCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTCGGC 20388 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 20387 GATCTCGGCAACGTC 20373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412525440226148