Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq56789 95.1 1e-14 seq59302 93.3 3e-14 seq49488 93.3 3e-14 seq61669 89.7 4e-13 seq59876 89.7 4e-13 seq56988 87.8 1e-12 seq56980 87.8 1e-12 >seq56789 Length=1379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || ||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 478 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 537 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || |||| | || | |||||||| Sbjct 538 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGACGATGAGGAGCGTCACGTCGG 596 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 597 CGATCTCGGCAACGTC 612 >seq59302 Length=3966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||||||| ||||| ||| ||| | Sbjct 1746 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATTACCCTCGAAGTCGAGAGCTCG 1805 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || || ||||| || || || ||| | ||| || || Sbjct 1806 -GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1864 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||| ||||| ||||||| | || |||| |||||||| Sbjct 1865 GCAGCGCCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 1924 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1925 CATCCAGAAGGAGTCGAC 1942 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||||||| |||| ||| | || Sbjct 1974 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCGAGC 2033 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | || |||||| Sbjct 2034 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 2093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||| ||||||| || |||| ||||||||| Sbjct 2094 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2153 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 2154 ATCCAGAAGGAGTCCAC 2170 >seq49488 Length=478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||||||| ||||| ||| ||| | Sbjct 83 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAGAGCTCG 142 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||||| || || || || | ||| ||||| Sbjct 143 -GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCA 201 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 202 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 261 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 262 CATCCAGAAGGAGTCGACGCTCCAC 286 >seq61669 Length=1808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || |||||| |||| ||| | || Sbjct 895 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACCCTCGAGGTCGAGTCGAGC 836 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| |||||| Sbjct 835 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 776 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 775 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACGCTGGCCGACTACAAC 716 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 715 ATCCAGAAGGAGTCTAC 699 >seq59876 Length=30768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || ||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 20507 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 20448 Query 105147 CACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 ||||||||||| | || || | || ||||||| || || | | || | |||||||| Sbjct 20447 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTCGG 20389 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 20388 CGATCTCGGCAACGTC 20373 >seq56988 Length=1639 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || | |||||||| ||||| ||| |||| ||| | | Sbjct 907 AATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAGTCGAG 848 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | || ||||| Sbjct 847 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 788 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 787 GCAGCGCCTCATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 728 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 727 CATCCAGAAGGAGTCCAC 710 >seq56980 Length=1463 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| ||||| ||| | | Sbjct 860 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCGAG 919 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | ||| ||||| Sbjct 920 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 979 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 980 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 1039 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1040 CATCCAGAAGGAGTCCAC 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398571334662004