Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq49488 104 2e-17 seq60456 93.3 3e-14 seq60152 89.7 4e-13 seq62514 86.0 5e-12 seq61669 86.0 5e-12 >seq49488 Length=478 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || ||||| || || || || ||||| || || || Sbjct 309 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 250 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || |||||||| | || | | |||||||| || ||| Sbjct 249 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 190 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| || || | || | ||||| || || ||| Sbjct 189 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACT 130 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 129 TCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 83 >seq60456 Length=68670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || || || ||||| || || || | |||||| Sbjct 47415 ACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 47356 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | ||||| || || ||||||||||| || Sbjct 47355 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTT 47296 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||||| | || | ||||| || || ||||| || || || Sbjct 47295 ATCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTGAT 47236 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 47235 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 47200 >seq60152 Length=76952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | || || || || ||||| || ||||| || || || Sbjct 63607 CCTCCGCGAAGACGAAGAACGAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCC 63548 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || |||||||| | || | | ||||| || || ||| Sbjct 63547 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 63488 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || | || | ||||| || ||| || Sbjct 63487 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGGATTCGACC 63428 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | ||| || || || |||||||| Sbjct 63427 TCGAGGGTGATCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 63381 >seq62514 Length=5924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | || ||| || || | || || ||||| || || || ||||| || | Sbjct 3617 GTTG-CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3675 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | || | |||||| || ||||| || ||||| ||| | || | | ||||| || | Sbjct 3676 CGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGG 3735 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | ||||||||||| ||||| || | || || || || | || | ||||| || | Sbjct 3736 GGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGAGCTCT 3795 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || || || | ||| || || || |||||||| Sbjct 3796 CGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 3847 >seq61669 Length=1808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||||| || || || ||||| || || || Sbjct 192 CCGCCGCGCAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 251 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || |||||||| | || | | ||||| || || ||| Sbjct 252 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 311 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| || || || | || || || || | || | ||||| || || ||| Sbjct 312 ATACCCTCCTTATCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCTGAGCTCTCGACT 371 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 372 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384924193839876