Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq61669 111 3e-19 seq61614 109 1e-18 seq62774 107 4e-18 seq59302 105 1e-17 seq60456 104 5e-17 seq56988 102 2e-16 >seq61669 Length=1808 Score = 111 bits (122), Expect = 3e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | ||| || ||||| || ||||| || || || || | Sbjct 667 TACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 726 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || ||||| || | Sbjct 727 CCAGCGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGGGG 786 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||||| ||||| || || || ||||| || | | || Sbjct 787 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTCGCTCGACTCG 845 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || ||||||||||| |||| ||||| || || |||||||| Sbjct 846 ACCTCGAGGGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 895 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || ||||| || || || || | || | | ||||| || || || || || Sbjct 470 AGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCC 529 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTT 82731 ||||||||| || | || || || || || || || ||||| || || ||||| ||| | Sbjct 530 AGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGC-T 588 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 | || || ||||| || || | | || || || | ||| ||||||||||| || | | Sbjct 589 TCACGTTCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGAG 648 Query 82792 TCTTTACAAATATCTGCAT 82810 |||| || || |||||||| Sbjct 649 TCTTGACGAAGATCTGCAT 667 >seq61614 Length=59386 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || || || || ||||| || || || || | Sbjct 2503 TACCGCCGCGCAGACGAAGAACGAGRTGGAGMGTSGACTCCTTCTGGATGTTGTAGTCGG 2562 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || || || ||||| || | || ||||| |||| Sbjct 2563 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAG 2622 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || || ||||| ||||| || || || ||||| || | | || Sbjct 2623 GGATGCCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTCGACTCG 2681 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| ||||||||||| || | ||||| || || |||||||| Sbjct 2682 ACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2731 >seq62774 Length=14773 Score = 107 bits (118), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || | || | | ||| Sbjct 8654 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCG 8595 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || || |||||| Sbjct 8594 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTA 8535 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || |||||||| || | | || || || | ||| || Sbjct 8534 TCCTGGATCTTCTGCTTG-ACGTTCTCAATCGTGTCGCTCGACTCGACCTCGAGAGTAAT 8476 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 8475 CGTCTTGCCCGTGAGAGTCTTGACGAAGATCTGCAT 8440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | ||| || || || || ||||| || || || |||| Sbjct 8438 CCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 8379 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || ||||| ||||| Sbjct 8378 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGG 8319 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| | ||||| ||||| || || || || ||||| | | || || Sbjct 8318 ATGCCTTCCTTGTG----ATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTCGACTCGAC 8264 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || ||||||||||| || | ||||| || || ||||||||| Sbjct 8263 CTCGAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 8215 Score = 84.2 bits (92), Expect = 4e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 8882 CGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 8823 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| || || || || ||||| Sbjct 8822 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTG 8763 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||||| || || || ||||| || || | || || || | || | Sbjct 8762 TCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCCG-AGCTCTCGACCTCGAGGGTGA 8705 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| ||||| || || |||||||| Sbjct 8704 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8668 >seq59302 Length=3966 Score = 105 bits (116), Expect = 1e-17 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 1974 TACCACCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 1915 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||||||||| || | || || || || | Sbjct 1914 CCAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCAGGGG 1855 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TC 82759 | || || ||||| || || ||||| ||| || || || || ||||| || || | || Sbjct 1854 GGATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTC-CGAGCTCTC 1797 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || |||||||| |||| |||||| || || |||||||| Sbjct 1796 GACTTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1746 >seq60456 Length=68670 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || | || | | ||| Sbjct 46958 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCG 46899 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| || || || |||||||| Sbjct 46898 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTG 46839 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || ||||| || || | | || ||||| | || || Sbjct 46838 TCCTGGATCTTCTGCTTC-ACGTTCTCAATGGTGTCGCTCGACTCGACTTCGAGGGTGAT 46780 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| ||||| || || |||||||| Sbjct 46779 CGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 46744 >seq56988 Length=1639 Score = 102 bits (112), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| || || || || | || | | ||| Sbjct 692 CGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCG 751 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| ||||| || || ||||| Sbjct 752 TCCTCGAGCTGCTTGCCRGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTG 811 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || ||||| || | | || || || | || || Sbjct 812 TCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGAT 870 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||||| | ||||| ||||| ||||||||| Sbjct 871 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATT 907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981036744421404