Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq59610 118 3e-21 seq60463 93.3 1e-13 >seq59610 Length=50575 Score = 118 bits (130), Expect = 3e-21 Identities = 133/177 (75%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| || ||| || || | ||||| || | || || ||||||||| Sbjct 5198 CTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTT 5257 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || |||||||||||| | || ||||| || || |||| ||| || |||| ||||||| Sbjct 5258 CTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 5316 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 | ||||||| || |||||||| | || |||||||| ||||| || |||||||||| Sbjct 5317 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACACCA 5373 >seq60463 Length=11997 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 9598 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 9539 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 9538 GCCGCCAACGCGATCCAGTTCACCGT 9513 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 9999 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 9940 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 9939 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 9880 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 9879 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 9848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587057252526020