Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq60463 136 5e-27 seq43814 96.9 4e-15 seq43813 96.9 4e-15 >seq60463 Length=11997 Score = 136 bits (150), Expect = 5e-27 Identities = 672/1057 (64%), Gaps = 22/1057 (2%) Strand=Plus/Plus Query 110660 AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 ||||||| |||||| | | || || || |||||| | | | ||||||||| || Sbjct 9846 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTC 9905 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || |||||||| || || || |||| ||| || | ||| ||||| || ||||| Sbjct 9906 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATG 9965 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || |||| | || ||| || ||||| | || |||| | ||| || Sbjct 9966 GGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCC 10025 Query 110840 CAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899 ||||| | || | | | || |||| | ||| ||| ||| || | |||| Sbjct 10026 CAGTCCCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGAC 10085 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG-- 110957 ||||| || |||||| |||| | |||| || | | | | || | || | ||| Sbjct 10086 GCGGGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTC---GTTCGAG 10142 Query 110958 -CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA-TTCATCTCCTTGGCTTC 111015 | |||||| ||||| || ||||| || ||||| | || || | ||| ||| || Sbjct 10143 GCGACCAGGGCGGCGTGGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTC 10201 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 || || | | || ||| | || || || || || || || || || || | Sbjct 10202 GTCGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAAT 10261 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATT 111132 || || || ||||| ||||| || || || || || ||| ||||| || | || Sbjct 10262 GCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTT 10318 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||| || || ||| || || ||||| || | ||| || || || || || | Sbjct 10319 GATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTT 10378 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | ||||| || || | | || || |||| || || |||| || |||| || Sbjct 10379 GTGGTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTT 10432 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| || ||| ||| || ||||||| | | || || || | ||| || Sbjct 10433 GCACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGA 10492 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || || | | || ||||| ||| |||||| ||||||||||| ||||| Sbjct 10493 CTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCAT 10552 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGG 111432 ||||||||| || ||||| |||| || | ||| || || ||| | || ||| Sbjct 10553 GTAGGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTT 10612 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 || | | | || || |||||| |||||| ||| | || ||||||| Sbjct 10613 GACCACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTT 10672 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| || ||| | ||||| || || | || || || || || ||||| | || || Sbjct 10673 GCCCCACGAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 10732 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 ||| || ||||||||||| || || |||||||||||| | |||||||| | Sbjct 10733 CATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGC 10792 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGT 111671 || ||| || | || ||||| || | | || ||||| || | ||| ||||||| Sbjct 10793 GCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGT 10851 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||| ||||| || |||| |||| || ||||| || Sbjct 10852 GCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 11128 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 11187 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 11188 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 11247 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 11248 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 11307 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | |||| || || ||||||| |||| Sbjct 11308 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 11367 Query 112076 TACTGTGG 112083 | ||| || Sbjct 11368 TGCTGGGG 11375 >seq43814 Length=1982 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | |||| || || ||||||| |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 112076 TACTGTGG 112083 | ||| || Sbjct 364 TGCTGGGG 371 >seq43813 Length=6241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 124 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 183 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 184 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTT 243 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 244 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 303 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | |||| || || ||||||| |||| Sbjct 304 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATG 363 Query 112076 TACTGTGG 112083 | ||| || Sbjct 364 TGCTGGGG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627538712265600