Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq60463 224 1e-53 seq43814 122 1e-22 seq43813 122 1e-22 seq59610 107 2e-18 >seq60463 Length=11997 Score = 224 bits (248), Expect = 1e-53 Identities = 879/1361 (65%), Gaps = 36/1361 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 9549 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 9608 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||||| || | || ||||| ||| ||| | ||| || |||||| || Sbjct 9609 AGCTTGGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 9668 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 ||||| || ||||| || || | | | | || |||||||| ||| || Sbjct 9669 GCCGAGCGATCAGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 9728 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 || || ||||| || || || ||||| ||| |||| |||| || || | | Sbjct 9729 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACTGAGCCGTTGTGCGAG 9788 Query 118077 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 || | | ||| | || |||||||| || || | || || || || Sbjct 9789 ACGAGCTTGTTCTTGAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGG 9848 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 |||| ||||| || || || || |||||| |||| | ||||| ||||||||| Sbjct 9849 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 9908 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 9909 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 9968 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 |||| ||| || ||| || ||||| | | ||| | ||| | | ||||| Sbjct 9969 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 10028 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || | || | | | | | ||| | || |||||| | || | |||||| Sbjct 10029 TCCCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 10088 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433 ||||| |||||| | |||| || | |||||| |||| ||| | ||| ||| || Sbjct 10089 GGCGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GCG 10145 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 118492 | ||||| ||||| || || || || || ||| | || || | | ||||||||| Sbjct 10146 ACCAGGGCGGCGTGGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTC 10204 Query 118493 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 118552 | || ||| | | || | || || || || || || || || || || | ||| Sbjct 10205 GCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGCC 10264 Query 118553 AATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCT 118609 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 10265 GATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGAT 10321 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 10322 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTG 10381 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 ||||| || || | | || || |||| || || |||| || ||||| || || Sbjct 10382 GTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 10435 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 ||| | ||| || ||||||| | | |||||||||| ||| || || Sbjct 10436 CACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 10495 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 |||||||| | || || || || ||||| ||| || ||||||||||| |||||||| Sbjct 10496 GATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCATGTA 10555 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA---CATCGGCAGCTGG 118906 ||||| || ||||| | || |||| ||| || || ||| | | | ||| || | Sbjct 10556 GGGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGC--CTTG 10613 Query 118907 CACA-GTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT-CT 118964 || | |||| || || ||||| | |||||| ||| | || |||| || Sbjct 10614 ACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCT 10671 Query 118965 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 | ||||| | || | || || || || | | ||||| ||||| ||||| | || Sbjct 10672 TGCCCCAC-GAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCG 10730 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCG 119083 ||| ||| || |||||||||||||| || || ||||| || |||| |||||||||| || Sbjct 10731 CCCATCTCCACGCGCTTCATGAAGAGATCGGGAATCCACAG-GCCGTAGAAGAGATCGCG 10789 Query 119084 ACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 ||| | |||| || | || || || || || | ||||| | ||| ||| Sbjct 10790 --GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCC 10847 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 |||||||| || || ||||| | |||| | ||||| || Sbjct 10848 GCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 10888 Score = 122 bits (134), Expect = 1e-22 Identities = 240/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| ||| | ||| ||| || || || Sbjct 11026 GCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCG 11085 Query 119268 CGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 || || ||||| || ||| | || ||| | | || || || || ||| Sbjct 11086 CGGATGTACGAG--TTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCG 11143 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | || |||| | |||| | ||||||| || ||||||||||| ||| Sbjct 11144 ACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCCTCGATCGAGTCCTCCT 11203 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | || |||||||| ||||| || || | || || || ||||||||||| | Sbjct 11204 TCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTTCCGGCGTTGAAGAGCG 11263 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | || |||| |||||||||||| | ||||||| Sbjct 11264 TCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAGGTCTCGATCACGGCGG 11323 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | |||| ||| ||| | ||||| | || ||||| | ||||| |||||| Sbjct 11324 GGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATGTGCTGGGGT 11376 >seq43814 Length=1982 Score = 122 bits (134), Expect = 1e-22 Identities = 240/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| ||| | ||| ||| || || || Sbjct 22 GCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCG 81 Query 119268 CGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 || || ||||| || ||| | || ||| | | || || || || ||| Sbjct 82 CGGATGTACGAG--TTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCG 139 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | || |||| | |||| | ||||||| || ||||||||||| ||| Sbjct 140 ACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCCTCGATCGAGTCCTCCT 199 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | || |||||||| ||||| || || | || || || ||||||||||| | Sbjct 200 TCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTTCCGGCGTTGAAGAGCG 259 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | || |||| |||||||||||| | ||||||| Sbjct 260 TCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAGGTCTCGATCACGGCGG 319 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | |||| ||| ||| | ||||| | || ||||| | ||||| |||||| Sbjct 320 GGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATGTGCTGGGGT 372 >seq43813 Length=6241 Score = 122 bits (134), Expect = 1e-22 Identities = 240/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| ||| | ||| ||| || || || Sbjct 22 GCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCG 81 Query 119268 CGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 || || ||||| || ||| | || ||| | | || || || || ||| Sbjct 82 CGGATGTACGAG--TTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCG 139 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | || |||| | |||| | ||||||| || ||||||||||| ||| Sbjct 140 ACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCCTCGATCGAGTCCTCCT 199 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | || |||||||| ||||| || || | || || || ||||||||||| | Sbjct 200 TCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGGGTTCCGGCGTTGAAGAGCG 259 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | || |||| |||||||||||| | ||||||| Sbjct 260 TCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAGGTCTCGATCACGGCGG 319 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | |||| ||| ||| | ||||| | || ||||| | ||||| |||||| Sbjct 320 GGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGAGCATGTGCTGGGGT 372 >seq59610 Length=50575 Score = 107 bits (118), Expect = 2e-18 Identities = 283/424 (67%), Gaps = 20/424 (5%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 |||||| || || | |||| |||| ||||||| |||| |||| |||||| ||||| Sbjct 5534 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 5475 Query 129898 GAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 |||| || ||| |||| || | ||| |||||||||| || || || || | | Sbjct 5474 GAGGGC-CACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGA 5416 Query 129957 CGATGGCGTGAATGGTCTC--CGTGCCAGGTCTATT----GCGCAAAGTCTTGAAGAGTT 130010 ||| || ||| | | || | ||| || | | ||| || | || ||| Sbjct 5415 TGATC---TGCTTGGGCACGTCGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG- 5360 Query 130011 CCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 || |||||| || |||||| |||||||| ||| ||| | || || |||| | Sbjct 5359 -CA-GGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGA 5302 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 | || ||||| || || |||||||| | |||||| || | || || ||| ||||||| Sbjct 5301 GGCCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGA 5242 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGA-----CT 130184 |||| ||||| || ||||| | | ||| ||||| ||||||| ||| | || Sbjct 5241 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCT 5182 Query 130185 TTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 130244 | | | ||||||||||||||| | ||||| |||| || | || ||||||| || Sbjct 5181 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGA 5122 Query 130245 TCGC 130248 | || Sbjct 5121 TGGC 5118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617949450072160