Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq60463 179 4e-40 seq46804 116 4e-21 seq59610 104 3e-17 seq43814 100 3e-16 seq43813 100 3e-16 >seq60463 Length=11997 Score = 179 bits (198), Expect = 4e-40 Identities = 654/1010 (65%), Gaps = 24/1010 (2%) Strand=Plus/Minus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 10888 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 10829 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 10828 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 10769 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||| ||||||||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 10768 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 10709 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || || | || || ||||| | || | ||| ||||||| || | ||| Sbjct 10708 CCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 10649 Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892 |||||| | || || || ||| | ||| ||| | || ||| || ||||| Sbjct 10648 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 10593 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 || || ||| ||||||| | |||||| || || || |||||||| ||||| || ||||| Sbjct 10592 CGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGATGCCTG 10533 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| ||| || || || | | || ||| || || || || || || || Sbjct 10532 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 10473 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 10472 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 10413 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 10412 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACAAGAAGCTGCACGACGTCGT 10359 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189 ||| |||||||| ||||| |||| || || || | || | |||||||| || Sbjct 10358 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 10299 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 | || || || || || ||| | ||| | || || || | || || ||||| || || Sbjct 10298 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATTGGAGTGCAGGGCCTGGC 10242 Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 10241 CGACGTCTTCATGATCCTGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 10182 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 ||| ||| || |||||||| || |||||||| || | || ||| | || ||| Sbjct 10181 CGC-CATCTTCGAGACCATCTACCACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 10123 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427 | || || | || | |||| |||||| || || || || |||||| ||| || Sbjct 10122 TCGAGGGCACCTACCAGACCTATGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 10064 Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487 || | |||| || | | | | | ||||||| | ||| | |||| Sbjct 10063 GACCTCTGGGGAGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 10004 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | ||||| || ||| |||||| |||| || ||||| || ||||| ||| | Sbjct 10003 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 9944 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 9943 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 9894 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||| ||||| | || ||| |||| | || Sbjct 11375 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 11316 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 11315 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 11256 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 11255 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 11196 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 11195 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 11136 Query 104462 GGTATTGG 104469 || || || Sbjct 11135 GGCATCGG 11128 >seq46804 Length=3119 Score = 116 bits (128), Expect = 4e-21 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| || | ||||| || |||||| || || || | ||| ||| Sbjct 2552 CTCATCGACACCTACGTCAAGGACACCGCCGAGAAGGCCCACCTGTTCAACGCCGCCCAG 2493 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 || | |||| ||| | ||||| || || |||||| | |||||| | | || |||| Sbjct 2492 ACCATCCCGTCTATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCGCCACCAAAG-- 2435 Query 94791 GCGTT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846 |||| |||||| |||| || ||| ||| || |||||||| |||||| ||| Sbjct 2434 GCGTAGAGACCTTTGGCCAGCGCCTGGTCGGATTCGCCGCCGTTGAGGGCATCTTCATCT 2375 Query 94847 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 | || || |||||| | || | |||||||||||||| || |||||||| || || || Sbjct 2374 CCGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCT 2315 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || |||||||||| ||| ||| ||||| || Sbjct 2314 TCGCCAACGAGCTCATCAGTCGCGACGAAGG 2284 >seq59610 Length=50575 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||||| ||| ||| ||| || || ||||| ||||||||||| || || Sbjct 5197 CCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 5256 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | |||||||||||||| || || ||||| || ||| |||| |||| Sbjct 5257 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 5316 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || | ||| || |||||||| |||||| || ||||| Sbjct 5317 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 5356 >seq43814 Length=1982 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||| ||||| | || ||| |||| | || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 104462 GGTATTGG 104469 || || || Sbjct 131 GGCATCGG 124 >seq43813 Length=6241 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||| ||||| | || ||| |||| | || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 104462 GGTATTGG 104469 || || || Sbjct 131 GGCATCGG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582802677804640