Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07]
62,836 sequences; 75,821,316 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq60463 179 4e-40
seq46804 116 4e-21
seq59610 104 3e-17
seq43814 100 3e-16
seq43813 100 3e-16
>seq60463
Length=11997
Score = 179 bits (198), Expect = 4e-40
Identities = 654/1010 (65%), Gaps = 24/1010 (2%)
Strand=Plus/Minus
Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656
|| ||||| || |||| |||| || ||||| ||||||||||| ||| | || |||||
Sbjct 10888 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 10829
Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716
|| || ||||| || | |||||| || |||||||||||||| || ||
Sbjct 10828 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 10769
Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776
|||||||| ||||||||||||||| | || ||| | | ||| | ||||| ||||||||
Sbjct 10768 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 10709
Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836
|| || | || || ||||| | || | ||| ||||||| || | |||
Sbjct 10708 CCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 10649
Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892
|||||| | || || || ||| | ||| ||| | || ||| || |||||
Sbjct 10648 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 10593
Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952
|| || ||| ||||||| | |||||| || || || |||||||| ||||| || |||||
Sbjct 10592 CGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGATGCCTG 10533
Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012
||| ||| || || || | | || ||| || || || || || || ||
Sbjct 10532 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 10473
Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072
|| | | | || || ||| ||| ||||| ||||| || || |||| ||
Sbjct 10472 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 10413
Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132
||||||| | ||| | | | ||||| | | || || ||||| ||
Sbjct 10412 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACAAGAAGCTGCACGACGTCGT 10359
Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189
||| |||||||| ||||| |||| || || || | || | |||||||| ||
Sbjct 10358 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 10299
Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249
| || || || || || ||| | ||| | || || || | || || ||||| || ||
Sbjct 10298 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATTGGAGTGCAGGGCCTGGC 10242
Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308
|| || ||||| | |||||| | | || |||||| || || |||| |
Sbjct 10241 CGACGTCTTCATGATCCTGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 10182
Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368
||| ||| || |||||||| || |||||||| || | || ||| | || |||
Sbjct 10181 CGC-CATCTTCGAGACCATCTACCACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 10123
Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427
| || || | || | |||| |||||| || || || || |||||| ||| ||
Sbjct 10122 TCGAGGGCACCTACCAGACCTATGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 10064
Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487
|| | |||| || | | | | | ||||||| | ||| | ||||
Sbjct 10063 GACCTCTGGGGAGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 10004
Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547
|| | ||||| || ||| |||||| |||| || ||||| || ||||| ||| |
Sbjct 10003 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 9944
Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597
|| ||| |||| || || || |||||||| ||||||||||| ||||||||
Sbjct 9943 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 9894
Score = 100 bits (110), Expect = 3e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| |||||||||||||| ||||| | || ||| |||| | ||
Sbjct 11375 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 11316
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341
| ||||| |||||| |||| || | |||| ||||| || || || ||||||
Sbjct 11315 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 11256
Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401
|| || || || || | || || |||| |||||||| || ||| |||||||||
Sbjct 11255 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 11196
Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461
|| ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| ||
Sbjct 11195 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 11136
Query 104462 GGTATTGG 104469
|| || ||
Sbjct 11135 GGCATCGG 11128
>seq46804
Length=3119
Score = 116 bits (128), Expect = 4e-21
Identities = 190/271 (70%), Gaps = 7/271 (3%)
Strand=Plus/Minus
Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731
||||| |||| || | ||||| || |||||| || || || | ||| |||
Sbjct 2552 CTCATCGACACCTACGTCAAGGACACCGCCGAGAAGGCCCACCTGTTCAACGCCGCCCAG 2493
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790
|| | |||| ||| | ||||| || || |||||| | |||||| | | || ||||
Sbjct 2492 ACCATCCCGTCTATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCGCCACCAAAG-- 2435
Query 94791 GCGTT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846
|||| |||||| |||| || ||| ||| || |||||||| |||||| |||
Sbjct 2434 GCGTAGAGACCTTTGGCCAGCGCCTGGTCGGATTCGCCGCCGTTGAGGGCATCTTCATCT 2375
Query 94847 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906
| || || |||||| | || | |||||||||||||| || |||||||| || || ||
Sbjct 2374 CCGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCT 2315
Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
|| |||||||||| ||| ||| ||||| ||
Sbjct 2314 TCGCCAACGAGCTCATCAGTCGCGACGAAGG 2284
>seq59610
Length=50575
Score = 104 bits (114), Expect = 3e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855
||||||| ||||| ||| ||| ||| || || ||||| ||||||||||| || ||
Sbjct 5197 CCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 5256
Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
||||| | || | |||||||||||||| || || ||||| || ||| |||| ||||
Sbjct 5257 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 5316
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|| | ||| || |||||||| |||||| || |||||
Sbjct 5317 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 5356
>seq43814
Length=1982
Score = 100 bits (110), Expect = 3e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| |||||||||||||| ||||| | || ||| |||| | ||
Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341
| ||||| |||||| |||| || | |||| ||||| || || || ||||||
Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252
Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401
|| || || || || | || || |||| |||||||| || ||| |||||||||
Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192
Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461
|| ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| ||
Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132
Query 104462 GGTATTGG 104469
|| || ||
Sbjct 131 GGCATCGG 124
>seq43813
Length=6241
Score = 100 bits (110), Expect = 3e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| |||||||||||||| ||||| | || ||| |||| | ||
Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341
| ||||| |||||| |||| || | |||| ||||| || || || ||||||
Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252
Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401
|| || || || || | || || |||| |||||||| || ||| |||||||||
Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192
Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461
|| ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| ||
Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132
Query 104462 GGTATTGG 104469
|| || ||
Sbjct 131 GGCATCGG 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582802677804640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |