Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq60463 536 1e-147 seq43814 206 3e-48 seq43813 206 3e-48 seq59610 194 2e-44 seq46804 93.3 5e-14 >seq60463 Length=11997 Score = 536 bits (594), Expect = 1e-147 Identities = 972/1404 (69%), Gaps = 41/1404 (3%) Strand=Plus/Minus Query 19469 GGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 || || || || |||||||| | |||||||||||||||||||| |||||||||||| || Sbjct 10900 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 10841 Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588 | || |||||||| ||| |||||| || | ||||||| ||| ||||| ||| Sbjct 10840 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 10781 Query 19589 TTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647 ||| |||||| |||||||||| || || |||||| || || |||| || || || || Sbjct 10780 TTCTACGGCC-TGTGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTG 10722 Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAA 19707 | || | ||||| ||||| ||| || || ||| | ||| ||| |||| | Sbjct 10721 GTCGCTCTTTTGCCCCAACGAAGCCCCCGGTCTGTTTGACTCGTGGGGCAAGGAGTTCGA 10662 Query 19708 TGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAG-GTGGTCCGGGCCCGG 19765 ||| |||| | |||| ||| |||||| | | | | |||||| ||||| | Sbjct 10661 GGAGAAGTACGAGCGCTACG-AGCAGGAGGGCC-GCGCGCGCCGCGTGGTCAAGGCCCAG 10604 Query 19766 GACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTAC 19825 || | ||| | | ||||| | ||| ||||||||||||| || |||||| ||| Sbjct 10603 GAGCTGTGGTTCGCCATCCTCGAGTCTCAGATCGAGACCGGCACGCCCTACATGCTGTAC 10544 Query 19826 AAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAAC 19885 ||||| ||| |||| |||||| || ||| || || ||||| | ||| ||||||| ||| Sbjct 10543 AAGGATGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAAC 10484 Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945 ||||| || || || | || | ||| |||||| |||||||| || ||||| Sbjct 10483 CTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCC 10424 Query 19946 TCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCC------AAATTG 19999 || || ||||| | ||| ||| || | ||| |||| | || || Sbjct 10423 TCGCTCGCGCTGCCCAAGTTCATCA------CCAACGGCGAGTTTGACCACAAGAAGCTG 10370 Query 20000 TACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTAC 20059 |||| || ||| ||||| || || || || ||||| |||| ||| Sbjct 10369 CACGACGTCGTGAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTAC 10310 Query 20060 CC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTC 20116 || | |||| ||| ||||| ||||| ||||||||| |||| |||| || || || Sbjct 10309 CCCGTGCCCGA---GGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATTGGAGTG 10253 Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC-CCAAGGCGCG 20175 ||||||||||||||||| |||||||| || ||| | | | || || | | |||| || Sbjct 10252 CAGGGCCTGGCCGACGTCTTCATGATCCTGCGCCACCCGTGGGA-GAGCGACGAGGCCCG 10194 Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235 |||||||||| | |||||||||| || | |||||||| ||||| | | ||| ||| Sbjct 10193 CGAGCTCAACCGCGCCATCTTCGAGACCATCTACCACGCCGCCCTGGTCGCCTCGAACGA 10134 Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295 ||||| | | || ||| | ||| |||| | |||| |||||||||||| |||| | Sbjct 10133 GCTCGCGCAGGTCGAGGGCACCTACCAGACCTATGAGGGCTCGCCCGCGTCCAAGGGCAA 10074 Query 20296 CCTCCAGCCGGACATGTGGGGCGTC------ACTGAGAATGAGTTTTGGAGCGCCCTCAA 20349 |||||||| ||| | ||||| ||| | || | | ||| | | ||| Sbjct 10073 GCTCCAGCCCGACCTCTGGGGAGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCG 10014 Query 20350 GGTTGAGATCAAGACC--CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACC 20407 | | ||| | || ||||| || ||||||||| | ||||| ||||||||||| || Sbjct 10013 CGCCAACATC--GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACG 9956 Query 20408 GCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACAT 20466 ||||||||| | |||||| |||| ||||||||| ||||| ||||| |||||||||||||| Sbjct 9955 GCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTT-GAGCCCTACACGACCAACAT 9897 Query 20467 CTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA 20526 |||| || || | || ||||| || ||| | | || ||| ||||||| | ||||| Sbjct 9896 CTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGA 9837 Query 20527 CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGG 20586 ||||| || || | |||||||| | ||||| | | ||| | ||| Sbjct 9836 GCTGCAGCAGCGCGGCCTCTGGTCGCCGGCGCTCAAGAACAAGCTCGTCTCGCACAACGG 9777 Query 20587 GAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATG 20643 |||||| |||| ||| |||||| | || ||||| | | |||| |||||| || Sbjct 9776 CTCAGTCCAGCGCATCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTG 9717 Query 20644 GGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCA 20703 ||| |||| ||| ||||||||||||||| || |||||| |||||||||||||| Sbjct 9716 GGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCTGATCGCTCGGCCTACATCGACCA 9657 Query 20704 GTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCA 20763 | |||||||||||| |||| ||||| | || | || ||||| | ||| ||||| Sbjct 9656 GAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTCGCCAAGCTCACCTCGATGCA 9597 Query 20764 TATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCCAA 20823 | |||| ||||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 9596 CTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCCGC 9537 Query 20824 GGCCAAGGCGCAGCAGGTTACCGT 20847 ||||| ||| ||| | ||||| Sbjct 9536 CGCCAACGCGATCCAGTTCACCGT 9513 Score = 457 bits (506), Expect = 1e-123 Identities = 935/1361 (69%), Gaps = 39/1361 (3%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||| |||||||| ||||| ||| |||| | |||||| | |||||| Sbjct 9555 TAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTG 9614 Query 78259 GCCAGACTCGGGTTCTCC-ATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACC 78317 || | || ||| || || ||| ||| ||||||||||||| |||||||||||| || Sbjct 9615 GCGA-ACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGA 9673 Query 78318 GCGGTCGGCCGCCATGTCGATGACCGACTTT-TGCGGAATCTCCCAGATGGTCCGGTAAA 78376 ||| || || ||||||||||||| ||| ||||| | |||||| | |||| ||| | Sbjct 9674 GCGATCAGCGGCCATGTCGATGAT-GACGCGCTGCGGGAGCTCCCACACGGTCTTGTACA 9732 Query 78377 TGGCCTTCAGCTCTTCCTGGATGTCCA----GCGCTTGTACGCTCCCACCGGCTCGCACA 78432 ||| | || || |||| ||| ||||| | | || || | || Sbjct 9733 GCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACTGAGCCGTTGTGCGAG-ACG 9791 Query 78433 ATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGC 78492 | | ||||| | || |||| | | || ||| || || || | |||||| Sbjct 9792 AGCTTGTTCTTGAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGGTGC 9851 Query 78493 CGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTAC 78552 ||| | | | ||| |||||||| ||| | ||||| |||||||||||||||||| Sbjct 9852 TCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAG 9911 Query 78553 GGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGC 78611 ||||| ||||| ||||||||| |||| |||||| | ||||||||| || |||||||| || Sbjct 9912 GGCTC-AAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGC 9970 Query 78612 GACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG----GCC--GTC 78665 || || || || || || ||||| ||| ||| | | | || ||| ||| Sbjct 9971 CACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTC 10030 Query 78666 CCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGG 78725 ||| || || | ||| ||||| | ||| || || || | |||| |||||| || Sbjct 10031 CCACCTGTCCGACGGCACGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGG 10090 Query 78726 CGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAG 78785 ||| |||| | |||| ||| | ||||| ||| ||||| ||| || ||| ||| Sbjct 10091 CGAGCCCTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAG 10150 Query 78786 GGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTC-GT 78844 ||| |||||||| | | |||||||||| | |||||||||||| ||| | ||| | | Sbjct 10151 GGCGGCGTGGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGGCC-TCGTCGCTCT 10209 Query 78845 CGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCG 78904 | ||| ||| || ||||||||||| |||||||||||||| || || || |||| | Sbjct 10210 CCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGCCGATGG 10269 Query 78905 GTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGA 78961 | | |||||||||||| || ||| ||||||| | ||||| |||| |||| Sbjct 10270 GCCTGTGGCGCATGTTCGAGTTGCGG---GCCTCGGGCACGGGGTAGTAGTTGATGTCGA 10326 Query 78962 TGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAA 79021 | || ||| ||||| ||||| ||| || |||| || || | |||| Sbjct 10327 TCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTGGTCAA 10386 Query 79022 AATGATTTCCTT--TGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGT 79079 | | | || ||||||| | || || ||||| |||||||||||||||||| Sbjct 10387 ACT--CGCCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCAC 10444 Query 79080 CTCGTCCGGGCTA-GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGC 79138 ||||| ||||| | | || || || || ||||||| || ||||||| |||||||| Sbjct 10445 CTCGT-CGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGC 10503 Query 79139 CGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCC 79198 ||| || || ||||||| ||| |||| ||||| |||||||| |||||| ||||| | Sbjct 10504 CGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCATGTAGGGCGTGC 10563 Query 79199 CGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAAC-CTTC 79257 ||||||| | |||| || ||| | | || ||| | ||| ||||| ||| || | | Sbjct 10564 CGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGC 10623 Query 79258 TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCT--CCCCATAGA 79315 | | | || ||| |||| | |||| ||| | ||| ||| ||||| || Sbjct 10624 GCGCGCGGCCCTCCTGC-TCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCA-CGA 10681 Query 79316 CATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAA 79375 || ||| || ||| |||| ||||| | || |||||| || || |||| | Sbjct 10682 -GTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCATCTCCA 10740 Query 79376 CCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATC 79434 | || ||||||||| || || ||||||| |||||| |||||| |||||| || || Sbjct 10741 CGCGCTTCATGAAGAGATCGGGAATCCACA-GGCCGTAGAAGAGATCGCGGGCGCGGTTC 10799 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 ||||| | ||| |||||| ||| ||||| ||||| | |||||| |||||||| ||| Sbjct 10800 TCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGC 10859 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 || || ||||||||||| | |||||||||||| || || || Sbjct 10860 TCGAGGTAGATGGCGAAAGCACCCTTGCGCTTACCACCTCC 10900 Score = 206 bits (228), Expect = 3e-48 Identities = 278/384 (72%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 || |||| |||||| ||||| |||| |||| | || ||||||||||| | || |||| | Sbjct 11008 CCTTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTG 11067 Query 79594 GCGACGCCGTTCGTCCCGTTGATT--CGTGTACCGCTCGCCCGAATG---TTCGAGCAGT 79648 | | |||||| || ||| ||| || || | || || ||| | || | | Sbjct 11068 GAGGTGCCGTTGGTGCCGCGGATGTACGAGTT--GGAGGCGCGGATGCGGTGCGCGGCGA 11125 Query 79649 GGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | ||||||||||| | || |||| |||||| || ||||||| Sbjct 11126 GG---CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGA 11182 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||||||||||||||| |||||||| | || ||||||||| ||||| ||| ||| Sbjct 11183 TGCCCTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 11242 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 || |||||||||||||| ||||| || ||||| ||||||| || || || || | Sbjct 11243 GGGTTCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGT 11302 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 |||| ||||| | ||| |||| || ||| ||| | ||||| || |||||||||| Sbjct 11303 CGTAGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGA 11362 Query 79889 AGAGGTACTGGGGCGTCTCGCCGA 79912 | || |||||| |||| ||| Sbjct 11363 GCATGTGCTGGGGTCGCTCGACGA 11386 Score = 154 bits (170), Expect = 2e-32 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || ||||| | || ||| || |||| || Sbjct 11375 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 11316 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| |||||||| || ||| || ||||||| ||||| || ||||| || ||| Sbjct 11315 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 11256 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| || ||||||| ||||| || ||||| | | |||||||| ||| Sbjct 11255 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 11196 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| || |||||| |||| || | ||||||||||| | |||| Sbjct 11195 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 11136 Query 19343 GGTATCGGGATCCACTGCTCGAA---TATCCGGTCGAGTGGTACACG--AATCAATGGGA 19397 || ||||| || | | || | ||||| || | || || ||| || | Sbjct 11135 GGCATCGG---CCTCGCCGCGCACCGCATCCG--CGCCTCCAACTCGTACATCCGCGGCA 11081 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || ||||| || |||| ||||||||||||| |||| |||| ||| | | Sbjct 11080 CCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGCT 11021 Query 19458 ACGTCAACCAGGG 19470 ||||| |||| || Sbjct 11020 ACGTCGACCAAGG 11008 >seq43814 Length=1982 Score = 206 bits (228), Expect = 3e-48 Identities = 278/384 (72%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 || |||| |||||| ||||| |||| |||| | || ||||||||||| | || |||| | Sbjct 4 CCTTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTG 63 Query 79594 GCGACGCCGTTCGTCCCGTTGATT--CGTGTACCGCTCGCCCGAATG---TTCGAGCAGT 79648 | | |||||| || ||| ||| || || | || || ||| | || | | Sbjct 64 GAGGTGCCGTTGGTGCCGCGGATGTACGAGTT--GGAGGCGCGGATGCGGTGCGCGGCGA 121 Query 79649 GGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | ||||||||||| | || |||| |||||| || ||||||| Sbjct 122 GG---CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGA 178 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||||||||||||||| |||||||| | || ||||||||| ||||| ||| ||| Sbjct 179 TGCCCTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 238 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 || |||||||||||||| ||||| || ||||| ||||||| || || || || | Sbjct 239 GGGTTCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGT 298 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 |||| ||||| | ||| |||| || ||| ||| | ||||| || |||||||||| Sbjct 299 CGTAGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGA 358 Query 79889 AGAGGTACTGGGGCGTCTCGCCGA 79912 | || |||||| |||| ||| Sbjct 359 GCATGTGCTGGGGTCGCTCGACGA 382 Score = 154 bits (170), Expect = 2e-32 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || ||||| | || ||| || |||| || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| |||||||| || ||| || ||||||| ||||| || ||||| || ||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| || ||||||| ||||| || ||||| | | |||||||| ||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| || |||||| |||| || | ||||||||||| | |||| Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 19343 GGTATCGGGATCCACTGCTCGAA---TATCCGGTCGAGTGGTACACG--AATCAATGGGA 19397 || ||||| || | | || | ||||| || | || || ||| || | Sbjct 131 GGCATCGG---CCTCGCCGCGCACCGCATCCG--CGCCTCCAACTCGTACATCCGCGGCA 77 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || ||||| || |||| ||||||||||||| |||| |||| ||| | | Sbjct 76 CCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGCT 17 Query 19458 ACGTCAACCAGGG 19470 ||||| |||| || Sbjct 16 ACGTCGACCAAGG 4 >seq43813 Length=6241 Score = 206 bits (228), Expect = 3e-48 Identities = 278/384 (72%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 || |||| |||||| ||||| |||| |||| | || ||||||||||| | || |||| | Sbjct 4 CCTTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTG 63 Query 79594 GCGACGCCGTTCGTCCCGTTGATT--CGTGTACCGCTCGCCCGAATG---TTCGAGCAGT 79648 | | |||||| || ||| ||| || || | || || ||| | || | | Sbjct 64 GAGGTGCCGTTGGTGCCGCGGATGTACGAGTT--GGAGGCGCGGATGCGGTGCGCGGCGA 121 Query 79649 GGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | ||||||||||| | || |||| |||||| || ||||||| Sbjct 122 GG---CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGA 178 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||||||||||||||| |||||||| | || ||||||||| ||||| ||| ||| Sbjct 179 TGCCCTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 238 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 || |||||||||||||| ||||| || ||||| ||||||| || || || || | Sbjct 239 GGGTTCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGT 298 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 |||| ||||| | ||| |||| || ||| ||| | ||||| || |||||||||| Sbjct 299 CGTAGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGACGGCCACGCGCATGA 358 Query 79889 AGAGGTACTGGGGCGTCTCGCCGA 79912 | || |||||| |||| ||| Sbjct 359 GCATGTGCTGGGGTCGCTCGACGA 382 Score = 154 bits (170), Expect = 2e-32 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || ||||| | || ||| || |||| || Sbjct 371 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGTCTGCACAAGGACAACATCCCCGCCGTG 312 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| |||||||| || ||| || ||||||| ||||| || ||||| || ||| Sbjct 311 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 252 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| || ||||||| ||||| || ||||| | | |||||||| ||| Sbjct 251 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 192 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| || |||||| |||| || | ||||||||||| | |||| Sbjct 191 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 132 Query 19343 GGTATCGGGATCCACTGCTCGAA---TATCCGGTCGAGTGGTACACG--AATCAATGGGA 19397 || ||||| || | | || | ||||| || | || || ||| || | Sbjct 131 GGCATCGG---CCTCGCCGCGCACCGCATCCG--CGCCTCCAACTCGTACATCCGCGGCA 77 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || ||||| || |||| ||||||||||||| |||| |||| ||| | | Sbjct 76 CCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGCT 17 Query 19458 ACGTCAACCAGGG 19470 ||||| |||| || Sbjct 16 ACGTCGACCAAGG 4 >seq59610 Length=50575 Score = 194 bits (214), Expect = 2e-44 Identities = 542/824 (66%), Gaps = 27/824 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | |||||| | || || | ||| ||||| | ||||| ||| Sbjct 4830 TCCTTCTGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAATCGCTG 4889 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 | |||||||| ||| ||||||||| |||||||||||||||||||| || || || Sbjct 4890 AGCAACGACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGGC 4949 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || ||| || || | | | ||| ||||| |||||| | ||||||| || Sbjct 4950 ATCGTGGCCGAGAACCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTGCCCGAGGCGCGC 5009 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| | || ||| || |||| ||||||||||||| |||||||||| | Sbjct 5010 TGCTTCTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTCCT 5068 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 ||||| | | |||||||| | | ||||||| | || ||||| ||||| ||||| Sbjct 5069 CATCGACACCTACGTCAAGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGAC 5128 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-------GAGTCC-- 59962 ||| | || || | || || || ||||| ||| ||||||| ||| | Sbjct 5129 CGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGG 5188 Query 59963 TGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTC 60022 || | | ||||| | || ||||| | || || ||| || || ||||||||||| Sbjct 5189 TGCCGAGACCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTC 5248 Query 60023 TGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTT 60082 ||| ||||| | || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 5249 CGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTT 5308 Query 60083 CTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTA 60142 | |||||| |||| ||| |||||||||||||| || ||||| || | | || Sbjct 5309 CAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC-CTGCCTC-CTC 5366 Query 60143 TTCACACCTATTGGAAAAATGCCCTTCCAAGGATATTCACA---AGATTGTTCAGTGGGC 60199 | ||| | | || | |||| || | || | | || |||| | | ||| Sbjct 5367 TACACCATGCTCGTCAACAAGCCC-TCGACCGACGTGCCCAAGCAGATCATCCTCGAGGC 5425 Query 60200 TTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGA 60259 || | |||| || ||| | || || |||| || ||||| || ||| | Sbjct 5426 CGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCCCTCATCGGCATGAA 5485 Query 60260 CGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCC-----CAG 60314 ||| | ||| |||||||| |||| ||||| ||||||||| | ||| | | Sbjct 5486 CGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGG 5545 Query 60315 TTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCG 60374 | |||||| || ||| | || ||||| ||| ||||||||| |||||| Sbjct 5546 CTGCGAGAAGCAC-----TACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCC 5600 Query 60375 TTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | || || |||||||||||||| ||| || ||||| || || Sbjct 5601 CTCGAGGGCAAGACCAACTTCTTCGAGCGCCGCGTCGGCGAGTA 5644 >seq46804 Length=3119 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || || |||||| |||| || |||||||| | || ||||||||||| ||||| || Sbjct 2394 CGTTGAGGGCATCTTCATCTCCGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 2335 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||||||||| |||||| ||| |||||||||| || Sbjct 2334 CCTCATGCCCGGCCTGGCCTTCGCCAACGAGCTCAT 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548093961195840