Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq59302 102 5e-17 seq62514 100 2e-16 seq61614 93.3 3e-14 seq62774 91.5 9e-14 seq60456 89.7 3e-13 seq61437 86.0 4e-12 seq56980 86.0 4e-12 seq60152 84.2 1e-11 seq49488 84.2 1e-11 seq56988 82.4 5e-11 >seq59302 Length=3966 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 1948 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 1889 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || | ||||| ||||| || || | ||||||||||| |||||| Sbjct 1888 TTACCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1829 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| ||||| | ||| || || || ||||| Sbjct 1828 TG-CTTCACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCGGT 1770 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| || || || ||||||||| Sbjct 1769 CAGCGTCTTGACGAAGATCTGCATG 1745 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 2404 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGC 2345 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 2344 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 2285 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 || || | | || ||||| |||||| || || | ||| || || || ||||| Sbjct 2284 TGCTTCACATTTTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 2225 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || |||||||| Sbjct 2224 AGCGTCTTGACGAAGATCTGCAT 2202 >seq62514 Length=5924 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 3617 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3676 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || |||||||| || | ||||| ||||| || Sbjct 3677 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGG 3736 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 3737 GGGAATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGGAGCTCT 3795 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || |||||||| | || || || || |||||||| Sbjct 3796 CGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 3847 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | |||||| ||| |||||| || ||||| || || | Sbjct 4077 CCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4136 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| || || || || Sbjct 4137 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 4196 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| ||| | Sbjct 4197 ATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGCTCG-ACTCGA 4254 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTG 34710 | || | ||| || || || || || | || ||||| || |||||||| |||| Sbjct 4255 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCGTTG 4308 >seq61614 Length=59386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 2277 CCACCACGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 2336 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| ||||||||||| Sbjct 2337 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 2396 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || |||||||| |||||| || || ||| | ||| ||||| ||| ||| | Sbjct 2397 ATGCCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCAATGGTGTCGCTCG-ACTCGA 2454 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || ||||| ||||| || | || || || || |||||||| Sbjct 2455 CCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2503 >seq62774 Length=14773 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || | || || || |||| || || || Sbjct 8870 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 8811 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| || || ||||| | ||||||||||| |||||| Sbjct 8810 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 8751 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| || || | ||| ||||| || ||||| Sbjct 8750 TG-CTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGT 8692 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 8691 CAGGGTCTTGACGAAGATCTGCAT 8668 >seq60456 Length=68670 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 46457 CCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 46398 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 46397 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 46338 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||| || || ||| | || |||||| |||||| || Sbjct 46337 ATGCCCTCCTTGTCCTGAATCTTCTG-CTTGACGTTCTCGATCGTGTCTGAGCTCTCGAC 46279 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || | ||| || || || ||||| | || ||||| || ||||||| ||||| Sbjct 46278 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTG 46226 >seq61437 Length=178460 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 48711 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 48652 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 48651 TTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTC 48592 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || ||| ||| | ||| ||||| ||| ||| || || | || ||||| ||||| | Sbjct 48591 TGCTTT-ACGTTCTCAATGGTGTCGCTCG-ACTCGACCTCGAGAGTAATCGTCTTACCCG 48534 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || |||||||| Sbjct 48533 TGAGGGTCTTGACGAAGATCTGCAT 48509 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 48507 CCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 48448 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || | ||||| ||||| || || Sbjct 48447 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 48388 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||||||| |||||| || || ||| | || ||||| ||| ||| | Sbjct 48387 ATGCCCTCCTTGTCTTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTCG-ACTCGA 48330 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 48329 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 48281 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | || || | || | ||||| ||| |||||| || ||||| || || Sbjct 49195 GTTGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 49136 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || ||||| || || || | |||||| || || || Sbjct 49135 GGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 49076 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 49075 AGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTCTCGATCGTGTCCGAGCTCT 49017 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || || || || | || || || || |||||||| Sbjct 49016 CGACCTCGAGGGTGATAGTCTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 48965 >seq56980 Length=1463 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 1316 GCCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1257 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| ||||| || || Sbjct 1256 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 1197 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||||| || || ||| | || ||||| ||| ||| Sbjct 1196 AATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGCTCG-ACTCA 1139 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| |||||||| | || || || || |||||||| Sbjct 1138 ACCTCGAGAGTAATCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 1089 >seq60152 Length=76952 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | |||||||| |||||| || ||||| || || | Sbjct 63379 CCGCCGCGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 63320 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 63319 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 63260 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| ||| | Sbjct 63259 ATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGCTCG-ACTCGA 63202 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || || ||||| || | || ||||| || || |||||||| Sbjct 63201 CCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATTTGCATGTT 63150 >seq49488 Length=478 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 309 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 250 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || | |||||| || || || || Sbjct 249 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 190 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||||| || ||| | || ||||| |||||| || Sbjct 189 ATACCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCCGAGCTCTCGAC 131 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || || || | || || || || |||||||| Sbjct 130 TTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 83 >seq56988 Length=1639 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34475 CGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT 34534 || ||||||| | || || | || | ||||| ||| |||||| || ||||| || | Sbjct 219 CGCCGCCGCCGCGCAGTCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 278 Query 34535 CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCG 34594 | | || || || |||| || || || ||||| || || || | ||||| ||||| | Sbjct 279 CGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGG 338 Query 34595 GCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTC 34653 |||| | ||||||||||| |||||| || || ||| | || ||||| | Sbjct 339 GCGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGGACGAC 397 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || | ||| || || || ||||| | || || || || ||||||||| Sbjct 398 TCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314488575744788