Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq61614 125 5e-24 seq62514 122 6e-23 seq61437 116 2e-21 seq60456 113 3e-20 seq49488 113 3e-20 seq59302 98.7 7e-16 >seq61614 Length=59386 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 2503 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 2444 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| ||||| | ||||| || || Sbjct 2443 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 2384 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 2383 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2324 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2323 ATCCAGAAGGAGTCCAC 2307 Score = 114 bits (126), Expect = 9e-21 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 2731 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGAGC 2672 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || ||||| Sbjct 2671 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 2612 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 2611 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 2552 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2551 ATCCAGAAGGAGTCSAC 2535 >seq62514 Length=5924 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 4075 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 4016 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| ||||| | || || || || Sbjct 4015 GACACCATTGAGAACGTTAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 3956 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 3955 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 3896 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||| | ||| Sbjct 3895 ATCCAGAAGGAGTCCACGCTCCATCTCGTT 3866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || | | Sbjct 3847 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGAGCTCC 3788 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || || || Sbjct 3787 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 3728 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | | ||| |||||| Sbjct 3727 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 3668 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 3667 ATCCAGAAGGAGTCCAC 3651 >seq61437 Length=178460 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 48509 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 48568 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || || || ||||| || ||| | || || || || Sbjct 48569 GACACCATTGAGAACGTAAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 48628 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| ||||| | | ||| |||||| Sbjct 48629 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 48688 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 48689 ATCCAGAAGGAGTCGAC 48705 >seq60456 Length=68670 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || || || |||||||| || | | Sbjct 46972 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTCGAGAGCTCA 47031 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || ||||| Sbjct 47032 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 47091 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 47092 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 47151 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 47152 ATCCAGAAAGAGTCCAC 47168 >seq49488 Length=478 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || || |||||||| || | || Sbjct 83 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAGAGCTCG 142 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || ||| | || || ||||| Sbjct 143 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAG 202 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| ||||| | | ||| |||||| Sbjct 203 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 262 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 263 ATCCAGAAGGAGTCGAC 279 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || |||||||||||||| || || | || Sbjct 311 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAGGTCGAGAGCTCG 370 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | ||||| || || Sbjct 371 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 430 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||||| | || || |||||||| || || || |||| ||||| Sbjct 431 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCAC 474 >seq59302 Length=3966 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| || ||||| || || || | Sbjct 1518 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTCGAGGTCGAGTCGAGC 1577 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || || || Sbjct 1578 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1637 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | || |||||| Sbjct 1638 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 1697 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1698 ATCCAGAAGGAGTCTAC 1714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337750747600688