Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq55806 84.2 2e-11 seq53197 84.2 2e-11 seq50875 84.2 2e-11 seq50874 84.2 2e-11 >seq55806 Length=3166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 53523 ACCCAGAGATGGGCGACAAGTTTGCATCCTT-CACGGCGCAAAAGGG-GACATG-CGGAG 53579 |||| | ||| || ||||||||||| || ||||| ||||||||| | |||| | || Sbjct 2290 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 2348 Query 53580 CGGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 2349 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 2406 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 ||||||| |||||||| ||||| | ||||| Sbjct 2407 TCAACCCGCACGCCTTCCCCTCGCGTATGAC 2437 >seq53197 Length=1181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 53523 ACCCAGAGATGGGCGACAAGTTTGCATCCTT-CACGGCGCAAAAGGG-GACATG-CGGAG 53579 |||| | ||| || ||||||||||| || ||||| ||||||||| | |||| | || Sbjct 877 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 819 Query 53580 CGGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 818 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 761 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 ||||||| |||||||| ||||| | ||||| Sbjct 760 TCAACCCGCACGCCTTCCCCTCGCGTATGAC 730 >seq50875 Length=2032 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 53523 ACCCAGAGATGGGCGACAAGTTTGCATCCTT-CACGGCGCAAAAGGG-GACATG-CGGAG 53579 |||| | ||| || ||||||||||| || ||||| ||||||||| | |||| | || Sbjct 1866 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 1808 Query 53580 CGGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1807 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1750 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 ||||||| |||||||| ||||| | ||||| Sbjct 1749 TCAACCCGCACGCCTTCCCCTCGCGTATGAC 1719 >seq50874 Length=2040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 53523 ACCCAGAGATGGGCGACAAGTTTGCATCCTT-CACGGCGCAAAAGGG-GACATG-CGGAG 53579 |||| | ||| || ||||||||||| || ||||| ||||||||| | |||| | || Sbjct 1874 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 1816 Query 53580 CGGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1815 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1758 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 ||||||| |||||||| ||||| | ||||| Sbjct 1757 TCAACCCGCACGCCTTCCCCTCGCGTATGAC 1727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405852154636696