Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq55806 91.5 1e-13 seq53197 91.5 1e-13 seq50875 91.5 1e-13 seq50874 91.5 1e-13 >seq55806 Length=3166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||||||||| ||||| ||||||||| | ||||| || Sbjct 2290 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 2348 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 2349 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 2406 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 2407 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 2438 >seq53197 Length=1181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||||||||| ||||| ||||||||| | ||||| || Sbjct 877 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 819 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 818 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 761 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 760 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 729 >seq50875 Length=2032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||||||||| ||||| ||||||||| | ||||| || Sbjct 1866 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 1808 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1807 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1750 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 1749 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1718 >seq50874 Length=2040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||||||||| ||||| ||||||||| | ||||| || Sbjct 1874 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 1816 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1815 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1758 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 1757 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369224226305516