Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq59610 93.3 6e-14 >seq59610 Length=50575 Score = 93.3 bits (102), Expect = 6e-14 Identities = 359/561 (64%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || || || || || || || | || || | |||||| || | ||| Sbjct 5359 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 5300 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 5299 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 5241 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC--------TC-CGTAACTGGCTTC 48310 ||||| || ||||| || ||| || | || | ||| || || || | | || Sbjct 5240 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCAAAGGTCTCGGCACCGCCCTC 5181 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 |||| |||||| ||||| || ||||||||||| || | |||| || || || Sbjct 5180 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGAT 5121 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || ||||| || || || | || || ||||| || || || | || Sbjct 5120 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 5061 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| |||||||| || || || || || || || || ||||| || || | ||| || Sbjct 5060 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 5001 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| |||||| | || || | || | ||||| || || || || || Sbjct 5000 GGGCACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 4941 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || || || || | | |||| | |||| | Sbjct 4940 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTCAGCGATTC 4881 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| || || || | ||| ||||| || || ||||| || || ||||| || Sbjct 4880 CCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGC 4821 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 4820 CTTCTTGTACATCTCCCAGAT 4800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694123172391040