Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq52313 89.7 2e-13 seq52312 89.7 2e-13 seq51270 89.7 2e-13 >seq52313 Length=2333 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2052 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 1993 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 1992 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGTGCG 1933 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 1932 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 1874 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 1873 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1814 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1813 GTCTTCGTGGTTCTCC 1798 >seq52312 Length=2318 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2037 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 1978 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 1977 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGTGCG 1918 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 1917 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 1859 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 1858 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1799 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1798 GTCTTCGTGGTTCTCC 1783 >seq51270 Length=7174 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 539 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 480 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 479 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGTGCG 420 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 419 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 361 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 360 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 301 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 300 GTCTTCGTGGTTCTCC 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187149848714496