Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23741 127 4e-24 seq24076 87.8 4e-12 seq23813 87.8 4e-12 seq23727 87.8 4e-12 seq23605 87.8 4e-12 seq23446 87.8 4e-12 seq23097 87.8 4e-12 seq22779 87.8 4e-12 seq22606 87.8 4e-12 seq22115 87.8 4e-12 seq20313 87.8 4e-12 seq19001 87.8 4e-12 seq18548 87.8 4e-12 >seq23741 Length=113318 Score = 127 bits (140), Expect = 4e-24 Identities = 293/434 (68%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| |||||||| |||| || | ||| || || || | || || || ||| Sbjct 78164 TTTGCGGAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTC 78223 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | |||||||| || | | || |||||| Sbjct 78224 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAG 78283 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||||| ||||| |||||||| || | || | || | || | |||| Sbjct 78284 CTCATCAGCCGCGATGAGGGTCTTCACTGCGACTTTGCTTGCCTCCTCTACAGCATGCTC 78343 Query 230353 CAGAACAAGCT-ACCATTCGAGACGGTC--AAACAAATCATTACAGAAGCAGTTGAAAAC 230409 ||||||| ||| ||| |||| | || || ||||| || || || || | Sbjct 78344 GTCAACAAGCCGACC--TCG-GACGTGCCCAAGCAGATCATCCTGGAGGCCGTCGAGATT 78400 Query 230410 GAAAAGGAGTTCATTTGTGA--CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 || ||||||||| | ||| |||| || ||||| || || ||||||||||| | Sbjct 78401 GAGAAGGAGTTCGTCACTGAGTCGCT---CCCCGTCGCGCTCATCGGCATGAACGCCAAC 78457 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| || || ||||| || | | || || || || | |||| Sbjct 78458 CTCATGTGCCAGTACATCGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCTGCGAG 78517 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | |||| || ||||| || | | ||||||||||| |||||| | || ||| Sbjct 78518 AAGCACTTCAACAGTACCAACCCGTTCCCCTGGATGGAGCTCATCTCGCTTGAGGGCAAG 78577 Query 230587 ACCAACTTCTTCGA 230600 |||||||||||||| Sbjct 78578 ACCAACTTCTTCGA 78591 >seq24076 Length=119838 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 67888 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 67829 Query 165776 ATGGGC 165781 | ||| Sbjct 67828 GTCGGC 67823 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 68373 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 68314 Query 165776 ATGGGC 165781 | ||| Sbjct 68313 GTCGGC 68308 >seq23813 Length=119519 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 43816 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 43757 Query 165776 ATGGGC 165781 | ||| Sbjct 43756 GTCGGC 43751 >seq23727 Length=11646 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 1376 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 1435 Query 165776 ATGGGC 165781 | ||| Sbjct 1436 GTCGGC 1441 >seq23605 Length=33005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 31953 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 31894 Query 165776 ATGGGC 165781 | ||| Sbjct 31893 GTCGGC 31888 >seq23446 Length=44718 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 39047 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 38988 Query 165776 ATGGGC 165781 | ||| Sbjct 38987 GTCGGC 38982 >seq23097 Length=13173 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 2988 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 3047 Query 165776 ATGGGC 165781 | ||| Sbjct 3048 GTCGGC 3053 >seq22779 Length=22469 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 13824 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 13883 Query 165776 ATGGGC 165781 | ||| Sbjct 13884 GTCGGC 13889 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 15934 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 15875 Query 165776 ATGGGC 165781 | ||| Sbjct 15874 GTCGGC 15869 >seq22606 Length=80227 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 29421 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 29480 Query 165776 ATGGGC 165781 | ||| Sbjct 29481 GTCGGC 29486 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 29574 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 29633 Query 165776 ATGGGC 165781 | ||| Sbjct 29634 GTCGGC 29639 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 31195 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 31136 Query 165776 ATGGGC 165781 | ||| Sbjct 31135 GTCGGC 31130 >seq22115 Length=12316 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 10650 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 10709 Query 165776 ATGGGC 165781 | ||| Sbjct 10710 GTCGGC 10715 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 11345 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 11286 Query 165776 ATGGGC 165781 | ||| Sbjct 11285 GTCGGC 11280 >seq20313 Length=8778 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 8515 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 8456 Query 165776 ATGGGC 165781 | ||| Sbjct 8455 GTCGGC 8450 >seq19001 Length=13178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 7353 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 7412 Query 165776 ATGGGC 165781 | ||| Sbjct 7413 GTCGGC 7418 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 7504 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 7563 Query 165776 ATGGGC 165781 | ||| Sbjct 7564 GTCGGC 7569 >seq18548 Length=20962 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 206 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 147 Query 165776 ATGGGC 165781 | ||| Sbjct 146 GTCGGC 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057497390889740