Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq19361 174 3e-38 seq23003 167 5e-36 >seq19361 Length=29087 Score = 174 bits (192), Expect = 3e-38 Identities = 436/655 (67%), Gaps = 17/655 (3%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| || || || ||||| ||| |||| ||||| || |||||||| Sbjct 15081 CTTTGGTTTCAAGACCCTCGAACGCTCGTACCTCTTCAAGATTGACGGAGTCATCGTGGA 15022 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||||||||| | ||| | || || ||||| |||||| ||| |||| Sbjct 15021 GCGGCCGCAGCACATGCTCATGAGGGTCGCCGTCGGCCTTCACACGGACAACATCCCCGC 14962 Query 248946 CGTGCTCGAGACGTACA----CCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001 |||||| ||||| ||| || || | | || | || || ||||| || | Sbjct 14961 CGTGCTGGAGACATACGATCTCCTCTCGCAGC-AGCTCT---TCACGCACGCCACTCCTA 14906 Query 249002 CGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATG 249060 | ||||||||||| || || | || | |||||| |||||||| || || | ||| Sbjct 14905 CTCTCTTCAACGCGGGCACGCCTCGTCCG-CAGCTGTCGTCGTGCTTCCTGCTCACGATG 14847 Query 249061 CAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAA 249120 | || ||||| |||| ||||| || |||||||| || ||| || || || || Sbjct 14846 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 14787 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 | || || || || || | |||| | |||||| || | ||||||||| Sbjct 14786 TCTGCCGGTGGCATTGGAGTTGCCGTTCACCGCATCCGCGCTTCGAACTCGTACATCCGC 14727 Query 249181 GGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCG 249238 || || || || ||| |||| || | ||| | ||||| || | |||| Sbjct 14726 GGCACCAACGGAACGTCGA--ATGGACTCATCCCCATGCTTCGTGTCTACAACGATACCG 14669 Query 249239 CCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAG 249295 | | | | | | |||| ||| || || ||||| ||||||| || ||| |||| Sbjct 14668 CTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTATCTGGAGC 14609 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 ||||||||||||||| || || ||||| || | || |||||| | ||||| ||| | Sbjct 14608 CGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAGGAGGAGA 14549 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCA 249415 | || ||||| |||||||||||||||||||| | ||| |||||||| ||||| Sbjct 14548 ACCGCGCTCGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATGAAGCGCGTTG 14489 Query 249416 AGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGA 249470 |||||| ||||||||| |||| | | ||| ||| || || | |||| |||| Sbjct 14488 AGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCCGGCCTCTTCGA 14434 >seq23003 Length=12893 Score = 167 bits (184), Expect = 5e-36 Identities = 770/1194 (64%), Gaps = 51/1194 (4%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| || || || ||||| ||| |||| || || || |||||||| Sbjct 592 CTTTGGTTTCAAGACCCTCGAACGCTCGTACCTCTTCAAGATCGACGGAGTCATCGTGGA 651 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||||||||| | ||| | || || || || |||||||||| |||| Sbjct 652 GCGGCCGCAGCACATGCTCATGAGGGTCGCCGTGGGCCTTCACAAGGACAACATCCCCGC 711 Query 248946 CGTGCTCGAGACGTA----CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001 |||||| ||||| || | || | || | | || | || || ||||| || | Sbjct 712 CGTGCTGGAGACCTATGACCTCCTTTCTCAGC-AGCTCT---TCACGCACGCCACTCCTA 767 Query 249002 CGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATG 249060 | ||||||||||| || || | || | ||||| |||||||| || || | ||| Sbjct 768 CTCTCTTCAACGCGGGCACGCCTCGTCCG-CAGCTCTCGTCGTGCTTCCTGCTCACGATG 826 Query 249061 CAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAA 249120 | || ||||| |||| ||||| || |||||||| || ||| || || || || Sbjct 827 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 886 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 | ||| || || || ||| | ||||| | |||||| || | || |||||| Sbjct 887 TCCGCAGGTGGCATTGGTGTTGCCGTCCACCGCATCCGCGCTTCGAACTCCTACATCCGC 946 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT----GAGTCCAC 249236 || || || || | || || | ||| | || || || || || || | Sbjct 947 GGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCG-TGTTTACAACGATACCGC 1005 Query 249237 -CGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGG 249292 ||| | ||| |||| || ||| || || ||||| ||||||| || ||| ||| Sbjct 1006 TCGCTACGTTGATCA----GGGCGGTGGCAAGCGCAAGGGAGCGTTCGCGATCTATCTGG 1061 Query 249293 AAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGC 249352 | |||||||||||| || || || ||||| || | || |||||| | ||||| ||| Sbjct 1062 AGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAGGAGG 1121 Query 249353 TCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCG 249412 | | || ||||| |||||||| ||||||||||| ||||| |||||||| |||| Sbjct 1122 AGAACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTGTTCATGAAGCGCG 1181 Query 249413 TCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATC 249472 || |||||| ||||| ||| |||| | | || ||| || || | |||| |||| Sbjct 1182 TCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCAGGCCTCTTCGAGT 1241 Query 249473 TACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGA-ATCCAA---CGGCATCGGC 249528 |||| ||| ||||| | || | ||||| | | || || ||| | Sbjct 1242 GCTGGGGCGACGAGTTCGAGGAGAAGTACGTGCGTTACGAGAACGAAGGCCGCGCTCGCC 1301 Query 249529 AAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATAGAGACA 249585 | | ||||||| | ||| | | || | | | | ||||| ||||| ||||| Sbjct 1302 GTGTC-GTCAAGGCCCAGGAGCTGTGGTTCTCCA---TTCTCGAGTCGCAGATCGAGACC 1357 Query 249586 GGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTT 249645 || ||| || | | || || ||||||| |||||| ||||| | ||| ||| Sbjct 1358 GGCACGCCTTACATCCTCTATAAGGATTCGTGCAATGCCAAGTCGAACCAGCAGCACCTT 1417 Query 249646 GGTACCATCCGCTCGTCAAATCTCTGTGCA--GAGGTGATTCAATACTCGTCCAAGGAGG 249703 || ||||||| || || || || |||||| ||||| ||||| ||| |||| || | Sbjct 1418 GGCACCATCCAGTCCTCGAA-CT-TGTGCACGGAGGTCATTCAGTACACGTCTCCTGATG 1475 Query 249704 AGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCACGT-GAGGGCGGACAGG 249762 || | || || |||||||| || || ||| | | |||| | ||||||| Sbjct 1476 AGGTCGCTGTGTGCAACCTCGCGTCGCTCGCTCTTCCCAAGTACGTCGTCAACGGACAGT 1535 Query 249763 ACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGATCAAAAACCTCAACAAG 249822 || || || ||| ||| | || || ||| | | | |||||||||||| Sbjct 1536 TCGATC-ACAAGAAGC-TCTACGACG--TGGTCAAAGTAGTCACCCGCAACCTCAACAAG 1591 Query 249823 GTGATTGATGTCAATTTTTACCC---CCTTGAGGAATGCAGGTTGTCCAACATGAAGCAC 249879 ||||| || |||| | ||||| || ||||| ||| || |||||| ||| Sbjct 1592 GTGATCGACATCAACTACTACCCAGTCCCTGAGGCCCGCA---ACTCGAACATGCGCCAC 1648 Query 249880 CGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGATGGGATTCCCC 249939 ||||| || || || ||||||| || |||||||| ||| | ||| | | |||| Sbjct 1649 CGTCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTTATGCTCATGCGCTGCCCC 1708 Query 249940 TTCGAGTCAGAGGAGG-CAGCGACGCTAAATAAACAGATTTTCGAGACCATCTA 249992 | ||| |||||| | |||| ||| ||| || |||||||||||||| Sbjct 1709 TGGGAGAGCCAGGAGGCCCGCGA-GCTCAATCGCGCTATCTTCGAGACCATCTA 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073434868584064