Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq23925 87.8 2e-12 seq23068 82.4 6e-11 >seq23925 Length=43003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 100603 GCACGGTATACACGTTCACGAGTTCGGCGACACCAGCAACGGATGTACGTCCGCCGGGGA 100662 |||||| | ||||| |||||||| || |||| || ||| || || | |||||| | Sbjct 10261 GCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAATGGGTGCGTGAGCGCCGGTGC 10202 Query 100663 ACATTTCAATCCTACGGGCCAAACGCACGGGGCGCCAAACG-CGACCGTGCGTCACGTCG 100721 || ||||||||| ||| | | |||||| | ||| ||| |||| | |||||||||| Sbjct 10201 GCACTTCAATCCTCACGGCAAGAAGCACGGCGGGCCTGACGACGAC-GAACGTCACGTCG 10143 Query 100722 GCGACTTGGGCAACGTC 100738 ||||| ||||||||||| Sbjct 10142 GCGACCTGGGCAACGTC 10126 >seq23068 Length=17433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 100603 GCACGGTATACACGTTCACGAGTTCGGCGACACCAGCAACGGATGTACGTCCGCCGGGGA 100662 |||||| | ||||| |||||||| || |||| || |||||| || | |||||| | Sbjct 17236 GCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAACGGGTGCGTGAGCGCCGGTGC 17295 Query 100663 ACATTTCAATCCTACGGGCCAAACGCACGGGGCGCCAAACG-CGACCGTGCGTCACGTCG 100721 || || ||||| ||| | | |||||| | || ||| |||| | ||||||||||| Sbjct 17296 GCACTTTAATCCCCACGGCAAGAAGCACGGCGGCCCTGACGACGAC-GAGCGTCACGTCG 17354 Query 100722 GCGACTTGGGCAACGTC 100738 ||||| ||||||||||| Sbjct 17355 GCGACCTGGGCAACGTC 17371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418181146468160