Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq23741 100 2e-16 >seq23741 Length=113318 Score = 100 bits (110), Expect = 2e-16 Identities = 291/440 (66%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 ||||| | | ||| || ||||| || ||| || | || ||||| || || |||| |||| Sbjct 78173 CGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCG-CCAT 78231 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||| || |||||||| || | || || || |||||| | || || Sbjct 78232 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCTCATCAG 78291 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 ||| || || ||||| ||||| ||||||||||| | || | || | | ||||| Sbjct 78292 CCGCGATGAGGGTCTTCACTGCGACTTTGCTTGCCTCCTCTACAGCATGCTCGTCAACAA 78351 Query 22920 ACCGTGTCAGGACGATGCAC-ATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTT 22978 ||| ||||| ||| | | || ||||| || ||||| || ||||||| || | Sbjct 78352 GCCGACCTCGGACG-TGCCCAAGCAGATCATCCTGGAGGCCGTCGAGATTGAGAAGGAGT 78410 Query 22979 TCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGT 23038 || || ||| | || | || | || ||||| || ||| | | || Sbjct 78411 TCGTCACTGAGTCGCTCCCCGTCGCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGT 78470 Query 23039 ACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACG 23098 |||| ||||||| || ||||| ||||||| || || || | | ||| | ||| Sbjct 78471 ACATCGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCTGCGAGAAGCACTTCAACA 78530 Query 23099 TTGCCAATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTTT 23157 | |||| || || | ||||| ||| | || |||| || || || |||||||| Sbjct 78531 GTACCAACCCGTTCCCCTGGATGGAGCTCATCTCGC-TTGAGGGCAAGACCAACTTCTTC 78589 Query 23158 GAACGCCGTGTGAGTGAATA 23177 || ||||| ||| | || || Sbjct 78590 GAGCGCCGGGTGGGCGAGTA 78609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356128976195494