Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18924 122 9e-23 seq23826 118 1e-21 seq19772 116 4e-21 seq22211 109 5e-19 seq22955 104 2e-17 seq24030 98.7 1e-15 seq23480 95.1 1e-14 seq23003 87.8 2e-12 seq19361 86.0 6e-12 seq22901 84.2 2e-11 >seq18924 Length=24070 Score = 122 bits (134), Expect = 9e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| |||||||||||| |||||| Sbjct 18018 GTTGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTACCA 18077 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| |||||||| |||||||| ||||| ||| ||||| || Sbjct 18078 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 18137 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || ||| ||||| | || | ||||||||||| | || Sbjct 18138 ACGTTCTCGATCGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 18197 Query 139748 TTTACGAATATTTGCATAGCTTATGTT 139774 || ||||| || ||||| ||| |||| Sbjct 18198 TTCACGAAGATCTGCATGGCTACTGTT 18224 >seq23826 Length=10614 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 8519 CCGCCACGCAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 8460 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| ||||| || |||| ||||| ||||||||||| || Sbjct 8459 AGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGGGA 8400 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| ||||| || | | ||| | ||||| | || ||| ||| Sbjct 8399 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATGGTGTCCGAGGACTCGACC 8340 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||||||| | || || ||||| || |||||| Sbjct 8339 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 8292 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || | ||| |||||||| ||||| Sbjct 8945 GTGGACTCCTTCTGTATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCC 8886 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| ||||| || || || || ||||| ||| ||||| || Sbjct 8885 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 8826 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | |||||||||||| | || Sbjct 8825 ACGTTCTCAATAGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 8766 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 8765 TTCACGAAGATCTGCATACCT 8745 >seq19772 Length=5961 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | || || || ||||||||||| || ||| Sbjct 1323 GCCACCACGCAGACGCAGTACGAGGTGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGC 1382 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||||||| || ||||| |||| || || ||||| |||||||| Sbjct 1383 CAGGGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGG 1442 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || || | | ||| | |||||| | | ||| || Sbjct 1443 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCGCTCGACTCGAC 1502 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| || |||||| Sbjct 1503 TTCGAGAGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATA 1551 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || || | |||| ||| || ||||| |||||| Sbjct 1810 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 1869 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || || || || ||||| ||| ||||| || Sbjct 1870 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 1929 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||||| ||| | ||||||||||| | || Sbjct 1930 ACGTTCTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1989 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1990 TTCACGAAGATCTGCAT 2006 >seq22211 Length=15201 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| ||| || ||||| |||||| Sbjct 4171 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 4112 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| ||||| || ||||| || ||||| ||| ||||| || Sbjct 4111 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 4052 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | | ||| ||||| | ||| | |||||||||||| | || Sbjct 4051 ACGTTTTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 3992 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 3991 TTAACGAAGATCTGCATA 3974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || ||| || || | ||| || ||||| || || Sbjct 4399 GTTGACTCCTTTTGAATGTTGTAGTCGGCCAGCGTACGACCGTCCTCAAGCTGCTTGCCG 4340 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| |||||||| || || || ||||| || || || || Sbjct 4339 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 4280 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || ||| | | ||| || || | || | ||||| |||||||| || Sbjct 4279 ACGTTCTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTC 4220 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 4219 TTGACGAAGATCTGCATACCT 4199 >seq22955 Length=9686 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 8382 CCGCCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 8441 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || ||||| |||| || || ||||| ||||| || Sbjct 8442 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 8501 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| ||||| || | | ||| | ||||| | | ||| ||| Sbjct 8502 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATCGTGTCCGAGCTCTCGACC 8561 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 8562 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || || | ||| |||||||| Sbjct 7686 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTG 7745 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| ||||| ||||| || || || || || || ||||| ||| || Sbjct 7746 CTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT 7805 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||||| | | || | || ||| | | ||| ||||||| ||| | |||||||||||| Sbjct 7806 TTGTTTAACGTTCTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATCGTCTTGCCGGT 7865 Query 139741 CAACGTTTT 139749 ||| || || Sbjct 7866 CAAGGTCTT 7874 >seq24030 Length=66970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | |||||||| ||||||||||| || || Sbjct 65963 GCCACCACGAAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGC 66022 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || ||||| |||| || || ||||| || || || Sbjct 66023 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGGGG 66082 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || || | | || | || ||| | | ||| || Sbjct 66083 AATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTATCGCTAGACTCGAC 66142 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||||||| ||||| || || ||||| || |||||| || Sbjct 66143 TTCGAGGGTGATCGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATACCT 66194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| |||||||| || ||| Sbjct 66222 GTTGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 66281 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || || || || ||||| ||| || || || Sbjct 66282 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 66341 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | || ||| ||||| | ||| | ||||||||||| | || Sbjct 66342 ACGTTTTCGATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 66401 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 66402 TTGACGAAGATCTGCATA 66419 >seq23480 Length=26370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| |||||||| ||||| Sbjct 13266 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTCGAGCTGCTTACCC 13325 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||||||||| || || || || ||||| ||| ||||| || Sbjct 13326 GCGAAGATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 13385 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| ||||| | ||| | ||||||||||| | || Sbjct 13386 ACGTTCTCGATGGTATCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 13445 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 13446 TTCACGAAGATCTGCAT 13462 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| || ||||| || ||| Sbjct 12812 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 12871 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || |||||||| ||||| ||| || || || Sbjct 12872 GCGAAGATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTC 12931 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || ||| | | ||| ||||||| ||| | ||||||||||||||| || Sbjct 12932 ACGTTCTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAAGGTC 12991 Query 139748 TT 139749 || Sbjct 12992 TT 12993 >seq23003 Length=12893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 152740 TGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGT 152799 |||| || ||| ||||||| | ||||||||||| ||||||||||| |||| ||| Sbjct 2390 TGGCGGCAGGACGCGTACGGAGGTAGTACATGCCAGTCTTGAGGCCCTTGCGCCAAGCGT 2331 Query 152800 ACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATT 152859 | | ||||| ||| | | ||| || || | ||| ||| ||||||| | ||| | || | Sbjct 2330 AGAAGTGCATCGAAGTGAGCTTGGCGAAGGAAGGCTCGCCCATGTAGATGTTGAGGGACT 2271 Query 152860 GACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGAT 152902 | || ||||| || | || | ||| || ||||||||||| Sbjct 2270 GGCTCTGATCGATGTACGCAGAGCGATCGGCAGCCATGTCGAT 2228 >seq19361 Length=29087 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 152741 GGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTA 152800 ||| || ||| ||||||||| ||||||||||| ||||||||||| |||| |||| Sbjct 13284 GGCAGCAGGACGCGTACGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAAGCGTA 13343 Query 152801 CATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTG 152860 | ||||| ||| | | ||| || || | ||| || ||||||| | ||| | ||| || Sbjct 13344 GAAGTGCATCGAAGTGAGCTTGGCGAAGGAAGGCTCTCCCATGTAGATGTTGAGCGACTG 13403 Query 152861 ACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGAT 152902 || || || || |||| | || || ||||||||||| Sbjct 13404 GCTCTGGTCGATGTATGCAGAGCGGTCGGCGGCCATGTCGAT 13445 >seq22901 Length=26441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || || || ||||||||||| ||| | || | ||| || Sbjct 2962 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATACTCGGCGAGCGTACGGCCGTCCTCC 2903 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| |||||| |||||| || |||||||||||||| || ||||| ||||| Sbjct 2902 AGCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGGAATTCCTTCCTTGTC 2847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495914573121600