Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq23003 91.5 2e-13 >seq23003 Length=12893 Score = 91.5 bits (100), Expect = 2e-13 Identities = 332/515 (64%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| ||||| ||| | || || ||||| || || | | |||| Sbjct 1260 TCGAACTCGTCGCCCCAGCACTCGAAGAGGCCTGGCGCTTCGTTGGGGCAGAAGAGCGAC 1201 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 || || || | ||| || || ||||| || || || || | ||| || || ||| || Sbjct 1200 CAGTCGCCTCCGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAG-GCCATAGAA 1142 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | |||||| || || ||||| || || || ||||| | | Sbjct 1141 GAGATCACGAGCACGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAA 1082 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 || || | |||||||| |||| || || || | ||||| || ||| || || Sbjct 1081 GATGTCGGCGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTGCGCTTGCCACCGCC 1022 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | ||| | |||||| | || ||||| | | ||| || || | || ||||| Sbjct 1021 CTGATCAACGTAGCGAGCGGTATCGTTGTAAACACGGAGCATGGGGATGAGTCCGTTGGA 962 Query 80160 TGTACCATTGGTCCCGGAGATATAG--CTTCCACTGGCACGAATATTACTAATTGATAGA 80217 ||| || ||||| ||| ||| ||| ||| | || || || | | | | Sbjct 961 TGTTCCGTTGGTGCCGCGGATGTAGGAGTTCGA--AGCGCGGATGCGGTGGACGGCAACA 904 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || ||||| || ||||| | ||||| | || | ||| || ||||||||| Sbjct 903 CCAATGCCACCTGCGGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCC 844 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||| || || |||| | || || || || || | || ||||| || Sbjct 843 TCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCACGACGAGAGCTGCGGACGAGGCGTG 784 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 ||||| || || | ||||||| |||||||| || Sbjct 783 CCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAA 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718052439480720