Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq23741 113 6e-20 >seq23741 Length=113318 Score = 113 bits (124), Expect = 6e-20 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || |||||||| ||||||||||| | || || | ||||| || || | || Sbjct 78324 CAAGCAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAGA 78265 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || ||||| || || | |||| || || ||||| ||||| Sbjct 78264 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGGAGCCAGAGAAGAA 78206 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT- 42239 ||| || || || || || ||| | | || | ||| || | || | | ||| | Sbjct 78205 GATGCCCTCGACAGCGGCGAAGCCGACCAGACGCTCCGCAAAGGTCTCGACGCCGTCCTT 78146 Query 42240 --GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 |||||||| | ||||| || |||||||| || || | | || ||| || ||||| Sbjct 78145 GGCAATCCACTTCAGGGCCCACTCCGCCTTCTTCTTGACCGAGGCCACCGTCTCGATGGC 78086 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | || || | || || || || || || || ||||||| || || Sbjct 78085 ACGGAACAGGCGATCCTTCTCCACCGCGTCCTTTACGTACGTGTCGATCAGGAGCGAGTA 78026 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 |||||| || |||||||| |||||||| ||||| || Sbjct 78025 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGCAA 77990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670937036094480