Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18924 107 2e-18 seq23826 96.9 4e-15 seq22211 91.5 1e-13 seq22955 86.0 6e-12 >seq18924 Length=24070 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||||||||| || |||||| Sbjct 18018 GTTGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTACCA 18077 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||| |||||||| |||||||| ||||| || ||||| || Sbjct 18078 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 18137 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || || || || | ||| | ||||||||||| | || Sbjct 18138 ACGTTCTCGATCGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 18197 Query 143168 TTTACGAATATTTGCATAGCTTATGTT 143194 || ||||| || ||||| ||| |||| Sbjct 18198 TTCACGAAGATCTGCATGGCTACTGTT 18224 >seq23826 Length=10614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || ||||| Sbjct 8489 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTCGAGCTGCTTACCC 8430 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 8429 GCGAAGATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 8370 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||||| || || || || | || | |||||||||||| | || Sbjct 8369 ACGTTTTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 8310 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 8309 TTCACGAAGATCTGCATA 8292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || ||||||||||| ||| | || | ||| ||||| || ||||| Sbjct 8945 GTGGACTCCTTCTGTATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCC 8886 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||| ||||| || || || || ||||| || ||||| || Sbjct 8885 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 8826 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| || || || || | || | |||||||||||| | || Sbjct 8825 ACGTTCTCAATAGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 8766 Query 143168 TTTACGAATATTTGCATAGCT 143188 || ||||| || |||||| || Sbjct 8765 TTCACGAAGATCTGCATACCT 8745 >seq22211 Length=15201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| || || || |||||| Sbjct 4171 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 4112 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||| ||||| || ||||| || ||||| || ||||| || Sbjct 4111 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 4052 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||||| | || || || | || | |||||||||||| | || Sbjct 4051 ACGTTTTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 3992 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 3991 TTAACGAAGATCTGCATA 3974 >seq22955 Length=9686 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 8412 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 8471 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||| ||||| || ||||| || ||||| || ||||| || Sbjct 8472 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 8531 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | |||||||| | || || || | || | ||||||||||| | || Sbjct 8532 ACGTTTTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 8591 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 8592 TTCACGAAGATCTGCAT 8608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506861674587360