Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23003 141 1e-28 seq19361 114 2e-20 seq23741 100 4e-16 >seq23003 Length=12893 Score = 141 bits (156), Expect = 1e-28 Identities = 315/469 (67%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||| |||| || |||||||| ||| | || || || | ||| | || ||| || Sbjct 1053 TCTATCTGGAGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAACCATG 1112 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || || ||| || || | || | || |||| || |||||||| || |||||| Sbjct 1113 GCAAGGAGGAGAACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTGTTCA 1172 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 ||||||||||| | | ||| ||| ||||| || | |||||| || | || || | Sbjct 1173 TGAAGCGCGTCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCAGGCC 1232 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC 97149 | | ||| ||||||||||| ||||| |||| |||||| | |||||| | || |||| Sbjct 1233 TCTTCGAGTGCTGGGGCGACGAGTTCGAGGAGAAGTACGTGCGTTACGAGAACGAAGGCC 1292 Query 97150 GATACGTGAGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGG 97206 | || | || |||| | || | || |||||| |||| | | | ||| Sbjct 1293 G---CGCTCGCCGTGTCGTCAAGGCCCAGGAGCTGTGGTTCTCCATTCTCGAGTCGCAGA 1349 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAA 97265 | ||||| || || || ||||| ||||| |||||| |||| ||| ||| ||||| Sbjct 1350 TCGAGACCGGCACGCCTTACATCCTCTATAAGGAT-TCGTGCAATGCCAAGTCGAACCAG 1408 Query 97266 CGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCT 97325 | ||| | ||||||||| || ||| || |||||||||| | | ||||| | ||| Sbjct 1409 CAGCACCTTGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTACACGTCT 1468 Query 97326 CCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGT 97374 || || ||| || || ||| || || ||| || ||| ||||||| Sbjct 1469 CCTGATGAGGTCGCTGTGTGCAACCTCGCGTCGCTCGCTCTTCCCAAGT 1517 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 ||||||||||| |||||||||||| | | | | | ||||| ||||||||||| | Sbjct 2192 TACAAGACTGTGTGGGAGATTCCGCAGCGCGTAG-TCATCGACATGGCTGCCGATCGCTC 2250 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || ||||| || ||||| || || |||| | ||| | | |||||| ||| | Sbjct 2251 TGCGTACATCGATCAGAGCCAGTCCCTCAACATCTACATGGGCGAGCCTTCCTTCGCCAA 2310 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | |||||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| || Sbjct 2311 GCTCACTTCGATGCACTTCTACGCTTGGCGCAAGGGCCTCAAGACTGGCATGTACTACCT 2370 >seq19361 Length=29087 Score = 114 bits (126), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 ||||||||||| |||||||||||| | | | || | ||||| ||||| |||||| | Sbjct 13481 TACAAGACTGTGTGGGAGATTCCGCAGCGCGTCG-TCATCGACATGGCCGCCGACCGCTC 13423 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || ||||| |||||||| || ||| |||| | ||| | | ||||| ||| | Sbjct 13422 TGCATACATCGACCAGAGCCAGTCGCTCAACATCTACATGGGAGAGCCTTCCTTCGCCAA 13363 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | |||||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| || Sbjct 13362 GCTCACTTCGATGCACTTCTACGCTTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCT 13303 >seq23741 Length=113318 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTT 125485 ||||| | |||||||| || |||||||||||||| || || | || ||| |||||||| Sbjct 78176 CTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGC-GCCATCTT 78234 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| |||||||| || || | | |||||| | || || Sbjct 78235 CTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCTCATCAGCCG 78294 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC 125572 || ||||| || ||||| |||||||| Sbjct 78295 CGATGAGGGTCTTCACTGCGACTTTGC 78321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740835974442480