Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq23068 120 3e-22 seq24030 104 2e-17 seq22955 104 2e-17 seq22211 104 2e-17 seq23925 102 7e-17 seq19772 86.0 5e-12 >seq23068 Length=17433 Score = 120 bits (132), Expect = 3e-22 Identities = 120/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 21131 CGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGAT 21190 ||| | ||||||||||||| ||||||||||| ||||| || |||| || ||||||| | Sbjct 17378 CGGCGAGGACGTTGCCCAGGTCGCCGACGTGACGCTCGTCGTCGTCAGGGCCGCCGTGCT 17319 Query 21191 TTTGGTGCGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCG 21249 | | | ||| ||| ||||||||| | |||||| | ||| |||||| || |||| || Sbjct 17318 TCTTG-CCGTGGGGATTAAAGTGCGCACCGGCGCTCACGCACCCGTTGGTGTTGTCCCCA 17260 Query 21250 AACTCGTGAACGTGAAAGCCGTGCAGTCCGCGC 21282 |||||||| ||||| ||||||||| | ||| || Sbjct 17259 AACTCGTGGACGTGGAAGCCGTGCTGGCCGGGC 17227 >seq24030 Length=66970 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||||||||| ||||| || |||| || | ||||||| ||||| || || Sbjct 65994 GTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 66053 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| | |||||| || ||| | ||||| ||||| || ||||| || Sbjct 66054 GCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 66113 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||||| || ||| ||||| ||| || || || || || || || Sbjct 66114 ACGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGATCGTCTTGCCAGTCAAGGTC 66173 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 66174 TTGACGAAGATCTGCAT 66190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || |||| || ||||||| ||||| ||||| Sbjct 66450 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCAAGCTGCTTACCA 66509 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| || ||| | ||||| ||||| || ||||| || Sbjct 66510 GCGAAGATGAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 66569 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||||| || ||| |||| ||||||||| || || || || || Sbjct 66570 ACGTTCTCGATCGTATCGCTAGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTC 66629 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 66630 TTGACGAAGATCTGCAT 66646 >seq22955 Length=9686 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||| | ||| | || ||||||||||| || ||||| || || Sbjct 8154 CCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCA 8213 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||| ||||| ||||| || | ||||| | |||||| || ||| Sbjct 8214 AGCGTACGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGA 8273 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || ||||| || || | ||| ||||||| | ||| | Sbjct 8274 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACT 8333 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||||| ||||| || ||||| ||||| || || ||||| Sbjct 8334 TCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 8380 >seq22211 Length=15201 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||| | ||| | || |||||||||||||| ||||| || ||| Sbjct 4429 CCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGCC 4370 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||| ||||| || || || | || || | |||||| || || Sbjct 4369 AGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 4310 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| ||||| || || | ||| ||||||| | ||| | Sbjct 4309 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACT 4250 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||||| ||||| || ||||| ||||| || || ||||| Sbjct 4249 TCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 4203 >seq23925 Length=43003 Score = 102 bits (112), Expect = 7e-17 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 21137 GGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGG 21195 ||||||||||||| ||||||||||| || || || |||| || ||||||| || ||| Sbjct 10125 GGACGTTGCCCAGGTCGCCGACGTGACGTTCGTCGTCGTCAGGCCCGCCGTGCTTCTTGC 10184 Query 21196 TGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCG 21255 | | ||| || |||||| | |||||| | ||| || ||| || |||| || |||||| Sbjct 10185 CGTG-AGGATTGAAGTGCGCACCGGCGCTCACGCACCCATTGGTGTTGTCCCCAAACTCG 10243 Query 21256 TGAACGTGAAAGCCGTGC 21273 || ||||| ||||||||| Sbjct 10244 TGGACGTGGAAGCCGTGC 10261 >seq19772 Length=5961 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| ||||| || |||| || | |||| || ||||| || || Sbjct 1354 GTTGATTCCTTTTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCA 1413 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| || || | |||||| ||||| || ||||| || Sbjct 1414 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1473 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| ||||| |||||||| ||||| || || || Sbjct 1474 ACGTTTTCGATCGTGTCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCCGTCAAGGTC 1533 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 1534 TTGACGAAGATCTGCAT 1550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451042300612