Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq23068 89.7 4e-13 seq23925 87.8 2e-12 >seq23068 Length=17433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 22338 GCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCACGTC 22397 || |||| |||||| || ||||| ||||| ||||| |||| | ||| |||||| | Sbjct 17227 GCCCGGCCAGCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAACGGGTGCGTGAG 17286 Query 22398 GGCAGGCGAGCACTTTAA-CCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGGAGC 22456 || || | ||||||||| ||| ||| | | | || |||| ||||||| | |||| Sbjct 17287 CGCCGGTGCGCACTTTAATCCCCACGG-CAAGAAGCACGGCGGCCCTGACGACGACGAGC 17345 Query 22457 GTCACGTCGGCGATTTGGGCAACGTGCGCTCCGTCG 22492 ||||||||||||| |||||||||| | | ||| || Sbjct 17346 GTCACGTCGGCGACCTGGGCAACGTCCTCGCCGACG 17381 >seq23925 Length=43003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/139 (75%), Gaps = 8/139 (6%) Strand=Plus/Minus Query 22347 GCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCACGTCGGCAGGCGA 22406 |||||| || ||||| ||||| ||||| |||| | |||||||||| | || || | Sbjct 10261 GCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAATGGGTGCGTGAGCGCCGGTGC 10202 Query 22407 GCACTTTAACCCTACGCACCGGCAA----CATGGCGCGCCTGACGCTGCGGAGCGTCACG 22462 |||||| || ||| ||| ||||| || |||| |||||||| | || ||||||| Sbjct 10201 GCACTTCAATCCT---CAC-GGCAAGAAGCACGGCGGGCCTGACGACGACGAACGTCACG 10146 Query 22463 TCGGCGATTTGGGCAACGT 22481 ||||||| |||||||||| Sbjct 10145 TCGGCGACCTGGGCAACGT 10127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419463969599538