Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22211 107 4e-18 seq23826 100 7e-16 >seq22211 Length=15201 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| | || || | |||||| || || || || || Sbjct 4399 GTTGACTCCTTTTGAATGTTGTAGTCGGCCAGCGTACGACCGTCCTCAAGCTGCTTGCCG 4340 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 4339 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGC-TT 4281 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || || || || ||||| |||||||| || | || Sbjct 4280 CACGTTCTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGT 4221 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4220 CTTGACGAAGATCTGCAT 4203 >seq23826 Length=10614 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 8733 AAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTC 8674 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || || || || || || || || Sbjct 8673 CTCAAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 8614 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||| ||||| ||||| || || || | ||||||||| | || || || || ||||| | Sbjct 8613 CTGGATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGG 8555 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || || || || |||||||| Sbjct 8554 TCTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 8521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151042899267384