Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19772 96.9 3e-15 seq23603 93.3 4e-14 seq23480 91.5 1e-13 seq22901 91.5 1e-13 seq22955 84.2 2e-11 seq23826 82.4 7e-11 >seq19772 Length=5961 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | |||||| ||||| || | ||| || || | ||| | ||||| Sbjct 1797 CACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTC 1856 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || || |||||||| || ||||| | Sbjct 1857 AAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTG 1916 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| ||| ||||||| | ||||| |||| |||||||| || Sbjct 1917 GATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTT 1976 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || || || ||||| |||||||||||||| Sbjct 1977 GCCGGTGAGGGTCTTCACGAAGATCTGCATGCT 2009 >seq23603 Length=18425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || ||||||||||| || ||| Sbjct 328 TCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 387 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||| ||| ||| ||||||| | ||||| || | |||||| Sbjct 388 TCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCGACCTCGAGGGTGATG 447 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 448 GTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | |||||| ||||| || | ||| || ||| | ||| | ||||| Sbjct 45 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 104 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || ||||||||||| || ||||| | Sbjct 105 AAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTG 164 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| ||| ||||||| | ||||| || | || ||||| || Sbjct 165 GATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTT 224 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 225 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 254 >seq23480 Length=26370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||| | ||| | ||| || ||||| || | ||| || ||| Sbjct 13236 CCTCCACGCAGGCGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13295 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||| ||||| || || | ||||| | | |||||||| || ||| Sbjct 13296 AGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGGGA 13355 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | || ||| ||| ||| ||| || || | | ||||| Sbjct 13356 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCCGAGCTCTCGACC 13415 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || || || || || ||||| |||||||||||| Sbjct 13416 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 13463 >seq22901 Length=26441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||||||||| | || |||||||| || | |||||| ||| Sbjct 2980 CCTCCGCGCAGGCGTAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATACTCGGCG 2921 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||||||||||| || ||||||| || | |||||||| |||||| Sbjct 2920 AGCGTACGGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGGA 2861 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 || ||||| ||||| | | || |||||||| || Sbjct 2860 ATTCCTTCCTTGTCCTGCAGCTTAGCCTTGACAGC 2826 >seq22955 Length=9686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || ||||| || | ||| || ||| | |||| | ||||| Sbjct 8399 CACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTC 8458 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | ||||| || || ||||| || || ||||| | Sbjct 8459 GAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 8518 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| ||| ||||| | | ||||| || | |||||||| || Sbjct 8519 GATCTTTTGCTTCACGTTTTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTT 8578 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || ||||| |||||||||||| Sbjct 8579 GCCGGTGAGGGTCTTCACGAAGATCTGCATG 8609 >seq23826 Length=10614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | ||| || ||| | |||| | ||||| Sbjct 8502 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTC 8443 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | |||||||| || |||||||| || ||||| | Sbjct 8442 GAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTG 8383 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| ||| ||||| | | ||||| || | ||||| || || Sbjct 8382 GATCTTTTGCTTCACGTTTTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTT 8323 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 8322 GCCGGTGAGGGTCTTCACGAAGATCTGCAT 8293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448156163483280