Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19998 156 7e-34 seq23269 149 1e-31 seq22355 149 1e-31 seq23910 145 1e-30 seq23526 132 8e-27 seq17888 131 3e-26 >seq19998 Length=26522 Score = 156 bits (172), Expect = 7e-34 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | || || || || |||||||| || ||||||||||| || | Sbjct 37 CGCCAAGCGTCACAGGAAGGTC-CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 95 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 96 TCCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCNGGCATGATCTACGAAGAGA 155 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| || || || ||| |||| Sbjct 156 CCCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 215 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||| ||||| ||||||| ||||||| || | || | || | Sbjct 216 AGCACGCTCGCAGGAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGG 275 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | ||||| ||||| Sbjct 276 GCCGCACCCTCTATGGCTTTGG 297 >seq23269 Length=12595 Score = 149 bits (164), Expect = 1e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | ||| || || |||||||| || ||||||||||| || || Sbjct 43 CGCCAAGCGTCACAGGAAGGTTCTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 102 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 103 CCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCCGGCATGATCTACGAAGAGAC 162 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| | | ||| || | ||| || || ||| ||||| Sbjct 163 CCGTGGCGTGCTCAAGGTCTTCCTCGARAACGTCATTCGTGACGCCGTCACCTACACCGA 222 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| | ||||| || || |||||||| ||||||| || | || | || || Sbjct 223 GCACGCTCGCAGGAAGACCGTTACGGCCATGGATGTCGTCTACGCCCTCAAGAGGCAGGG 282 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 283 CCGCACCCTCTACGGCTTTGG 303 >seq22355 Length=1683 Score = 149 bits (164), Expect = 1e-31 Identities = 182/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | || || || || |||||||| || ||||||||||| || | Sbjct 818 CGCCAAGCGTCACAGGAAGGTC-CTCCGTGACAACATCCAGGGTATCACCAAGCCCGCCA 760 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| | || ||||| || ||||| || |||||| |||| || || |||| ||||||| Sbjct 759 TCCGTAGGCTCGCTCGCCGCGGTGGTGTTAAGCGTATCTCCGGCATGATCTACGAAGAGA 700 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| || || || ||| |||| Sbjct 699 CCCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 640 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||| ||||| ||||||| ||||||| || | || | || | Sbjct 639 AGCACGCTCGCAGGAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGG 580 Query 16671 GCCGTA 16676 |||||| Sbjct 579 GCCGTA 574 >seq23910 Length=27541 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | ||| || || |||||||| || ||||||||||| || || Sbjct 9679 CGCCAAGCGTCACAGGAAGGTTCTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 9738 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 9739 CCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCAGGCATGATCTACGAAGAGAC 9798 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 9799 CCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 9858 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| | ||||| || || ||||||| | ||||| || | ||| | || || Sbjct 9859 GCACGCTCGCAGGAAGACCGTTACGGCCATGGACGTTGTCTACGCCCTCAAAAGGCAGGG 9918 Query 16672 CCG 16674 ||| Sbjct 9919 CCG 9921 >seq23526 Length=35450 Score = 132 bits (146), Expect = 8e-27 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | ||| || || |||||||| || ||||||||||| || || Sbjct 23926 CGCCAAGCGTCACAGGAAGGTTCTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 23867 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 23866 CCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCCGGCATGATCTACGAAGAGAC 23807 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 23806 CCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 23747 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||||| | ||||| || || ||||| Sbjct 23746 GCACGCTCGCAGGAAGACCGTTACGGCCATG 23716 >seq17888 Length=18728 Score = 131 bits (144), Expect = 3e-26 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | || || || || |||||||| || ||||||||||| || | Sbjct 201 CGCCAAGCGTCACAGGAAGGTC-CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 143 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| | || ||||| || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 142 TCCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCNGGCATGATCTACGAAGAGA 83 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| || || || ||| |||| Sbjct 82 CCCGTGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 23 Query 16611 AGCACGCT 16618 |||||||| Sbjct 22 AGCACGCT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053167029914