Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq23741 107 2e-18 seq24030 91.5 1e-13 seq19772 91.5 1e-13 seq22211 89.7 5e-13 >seq23741 Length=113318 Score = 107 bits (118), Expect = 2e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||||||||| || || || || || |||||||||||||| || ||| | ||| Sbjct 78610 GTACTCGCCCACCCGGCGCTCGAAGAAGTTGGTCTTGCCCTCAAGCGAGATGAGCTCCAT 78551 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | ||| || || | | ||||||| ||||| ||| |||| | ||| | ||| || Sbjct 78550 CCAGGGGAACGGGTTGGTACTGTTGAAGTGCTTCTCGCAGCCGAGAGCGACGAGCAGACG 78491 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAGCGA 119823 ||| || |||||||||||||| | ||||||| | ||| | |||||||| | | |||| Sbjct 78490 ATCGGCGACAAACTCGATGTACTGGCACATGAGGTTG-GCGTTCATGCCGATGAGCGCGA 78432 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | || | | | || | ||| ||||| ||||| ||||| || || Sbjct 78431 CGGGGAGCGACTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTC 78386 >seq24030 Length=66970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || |||||||| ||||| | || || | | Sbjct 66190 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATCACCCTCGAAGTCGAGTCTAGC 66131 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || |||||| | || || || ||||| ||||| || || || || || || || Sbjct 66130 GATACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 66071 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || || || | | | | | ||||| ||| Sbjct 66070 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 66011 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||| || |||||| |||| || ||||| | ||| | || || || Sbjct 66010 ATTCAAAAGGAGTCTACTCTCCACCTCGTCCTTCGTCTTCGTGGTGGCAA 65961 >seq19772 Length=5961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | || || ||||| | || || | | Sbjct 1550 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 1491 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 1490 GACACGATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1431 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || |||||||| | | | | | |||||| ||| Sbjct 1430 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCCGACTACAAC 1371 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||||| ||||| || |||| || || ||| Sbjct 1370 ATTCAAAAGGAATCAACCCTCCACCTCGTACTG 1338 >seq22211 Length=15201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | || || ||||| | || || | | Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || || |||||| ||||| || || || |||||||| || Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || || || || | | | | | |||||| ||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || |||| || || || Sbjct 4383 ATTCAAAAGGAGTCAACCCTCCACCTCGTGCT 4414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478518214918560