Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23003 502 6e-137 seq19361 461 2e-124 seq23741 96.9 9e-15 >seq23003 Length=12893 Score = 502 bits (556), Expect = 6e-137 Identities = 1073/1594 (67%), Gaps = 18/1594 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | | ||| ||| | || || Sbjct 749 TTCACGCACGCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTCG 808 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||||||| || ||||||||||| |||| ||||| || ||| | Sbjct 809 TGCTTCCTGCTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 868 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || ||||| || |||||| ||||| || |||||||| | ||||| | || || Sbjct 869 TGCGCTCTCATCTCCAAGTCCGCAGGTGGCATTGGTGTTGCCGTCCACCGCATCCGCGCT 928 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||| ||||| |||||||| ||| || || || || | |||||||| ||| Sbjct 929 TCGAACTCCTACATCCGCGGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCGT 988 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || |||| || | ||||| || ||||| || || |||||||| || ||||| Sbjct 989 GTTTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGGGAGCGTTC 1048 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| ||||| || ||||| || || || || ||||||||| ||| ||| Sbjct 1049 GCGATCTATCTGGAGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAAC 1108 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| ||||| |||||||| ||||||| || ||||| | |||| Sbjct 1109 CATGGCAAGGAGGAGAACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTG 1168 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||||| || | ||||| ||||| ||||| ||||| ||| Sbjct 1169 TTCATGAAGCGCGTCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCA 1228 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| ||||| ||||| | | | |||| || || || Sbjct 1229 GGCCTCTTCGAGTGCTGGGGCGACGAGTTCGAGGAGAAGTACGTGCGTTACGA----GAA 1284 Query 364087 GGAAAGGCTCGTAAGACAATTC----CCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||| | | || | | || || ||| |||| ||||| |||| | || || Sbjct 1285 CGAAGGCCGCGCTCGCCGTGTCGTCAAGGCCCAGGAGCTGTGGTTCTCCATTCTCGAGTC 1344 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||||| ||||| || || || || || | || || ||||||||||| |||||| || Sbjct 1345 GCAGATCGAGACCGGCACGCCTTACATCCTCTATAAGGATTCGTGCAATGCCAAGTCGAA 1404 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 ||||||||||||||| || || ||| ||| | || || ||| | ||| | ||||| Sbjct 1405 CCAGCAGCACCTTGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTACAC 1464 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 |||| || ||| || || || ||||| |||||| |||| ||||| || || Sbjct 1465 GTCTCCTGATGAGGTCGCTGTGTGCAACCTCGCGTCGCTCGCTCTTCCCAAGTACGTCGT 1524 Query 364323 AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCT 364382 | || || || ||| || | || || ||||| | | | || |||| || Sbjct 1525 CAACGGACAGTTCGATCACAAGAAGCTCTACGACGTGGTCAAAGTAGTCACCCGCAACCT 1584 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCG 364442 | ||||||| ||||||| || || || ||| | ||||| ||| || || ||||| Sbjct 1585 CAACAAGGTGATCGACATCAACTACTACCCAGTCCCTGAGGCCCGCAACTCGAACATGCG 1644 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCA--AG 364500 || || ||||| ||||||||||| ||||| || || ||||| ||| ||||||| | Sbjct 1645 CCACCGTCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTT---ATGCTCATGCG 1701 Query 364501 ATGGCATTTGATTCGCC-TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 || | | | ||| || || || | || ||| | ||||| || || || || Sbjct 1702 CTGCCCCTGGGAGAGCCAGGAGGCCCGCGAGCTCAATCGCGCTATCTTCGAGACCATCTA 1761 Query 364560 TTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTA 364619 | |||||| | |||||||| || |||| | |||| | ||| |||| || Sbjct 1762 CTACGCCGCACTCACTGCTTCCAACGAGATGGCCCAGGAGCAGGGCACCTACCCTACGTA 1821 Query 364620 TGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATC 364679 || || || || ||| |||| || |||| ||||| ||| ||| || || || Sbjct 1822 TGCTGGCTCGCCGGCTTCCGAGGGCAAGCTCCAACCCGATCTCTGGGGTGTTACTCCCTC 1881 Query 364680 TGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTC-GCAACT 364738 | | | ||| |||||| ||| || ||| ||||| | |||| ||| ||| | |||| Sbjct 1882 GGACAGGTGGGACTGGGCTACCCTCCGTGCCAACATCGCTCAGCACGGT-CTCAGGAACT 1940 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 ||||| | ||||||||||| ||||| || || ||||||| || || |||||||||| Sbjct 1941 CCCTCCTCGTGGCGCCCATGCCTACGGCATCCACCTCACAGATTCTTGGCAACAACGAGT 2000 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 ||||||| |||| || |||| | || |||| || ||||| |||| || || | | Sbjct 2001 GCTTCGAGCCGTACACCTCCAATATCTACACACGTCGCATTCTTGCCGGCGACTTCACCG 2060 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGA 364918 | || || || |||| || || || || || || ||||| | | | | | Sbjct 2061 TCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCTTGTGGTCGGCCGCCCTCA 2120 Query 364919 AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA-TTTCCAGAAGAT 364977 ||||| | || |||| || || || |||||||||| || | || | || || ||| Sbjct 2121 AGAACAAACTCGTCGCTCACAACGGCTCAGTGCAGAACA-TCGACGAGATCCCCGATGAT 2179 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 || ||| | ||||| || || ||||| ||| | ||| |||| || ||||| Sbjct 2180 CTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAGCGCGTAGTCATCGACATGGCT 2239 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 ||||||||| ||| | ||| |||||||||||| | ||| | | |||| |||| Sbjct 2240 GCCGATCGCTCTGCGTACATCGATCAGAGCCAGTCCCTCAACATCTACATGGGCGAGCCT 2299 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 ||| ||||||||| || || ||||| ||||||| Sbjct 2300 TCCTTCGCCAAGCTCACTTCGATGCACTTCTACG 2333 >seq19361 Length=29087 Score = 461 bits (510), Expect = 2e-124 Identities = 1064/1594 (67%), Gaps = 18/1594 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | | ||| ||| |||| || Sbjct 14924 TTCACGCACGCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTCG 14865 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||||||| || ||||||||||| |||| ||||| || ||| | Sbjct 14864 TGCTTCCTGCTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 14805 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || ||||| || |||||| ||| || || ||||| || | | ||| | || || Sbjct 14804 TGCGCTCTCATCTCCAAGTCTGCCGGTGGCATTGGAGTTGCCGTTCACCGCATCCGCGCT 14745 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||| ||||| |||||||| ||| |||||||| || | |||||||||||| Sbjct 14744 TCGAACTCGTACATCCGCGGCACCAACGGAACGTCGAATGGACTCATCCCCATGCTTCGT 14685 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || |||| || | ||||| || ||||| || || ||||| || || ||||| Sbjct 14684 GTCTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTC 14625 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| ||||| || |||||||| || || || ||||||||| ||| ||| Sbjct 14624 GCGATCTATCTGGAGCCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAAC 14565 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || |||||||| ||||| | || ||||| | |||| Sbjct 14564 CATGGCAAGGAGGAGAACCGCGCTCGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTG 14505 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||||| || ||||||| ||||| || || ||||| || Sbjct 14504 TTCATGAAGCGCGTTGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCC 14445 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| |||||||| || | | | |||| || || ||| Sbjct 14444 GGCCTCTTCGAGTGCTGGGGTGAGGAGTTCGAAGAGAAGTACGTGCGCTACGAGAATGAG 14385 Query 364087 GGAAAGGCTCG----TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||| ||||| | ||| || ||| |||| ||||| |||| | || || Sbjct 14384 GGACGCGCTCGCCGCGTCGTCAA----GGCCCAGGAGCTGTGGTTCTCCATTCTCGAATC 14329 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 ||||| ||||| || || || || || | ||||| || |||||||| |||||| || Sbjct 14328 ACAGATCGAGACCGGCACGCCTTACATCCTTTACAAGGACTCGTGCAATGCCAAGTCGAA 14269 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||||||||||| || || || ||| ||| | || || ||| | ||| | | ||| Sbjct 14268 CCAGCAGCACCTCGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTTCAC 14209 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 |||| || ||| || || || ||||| |||||| |||| |||||| || || Sbjct 14208 GTCTCCTGATGAGGTCGCAGTGTGCAACCTCGCGTCGCTCGCTCTTCCGAAGTACGTCGT 14149 Query 364323 AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCT 364382 | || || || ||| || | |||| ||||| | | | || |||| || Sbjct 14148 CAACGGCCAGTTCGATCACAAGAAGCTTTTCGACGTGGTCAAGGTCGTCACGCGCAACCT 14089 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCG 364442 | ||||||| ||||||| || || |||||| | ||| ||| || || ||||| Sbjct 14088 CAACAAGGTGATCGACATCAACTACTATCCAGTCATTGAGGCCCGCAACTCGAACATGCG 14029 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCA--AG 364500 ||| |||||||| ||||||||||| ||||| || || ||||| | | ||||||| | Sbjct 14028 TCACCGCCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCT---TCATGCTCATGCG 13972 Query 364501 ATG-GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 || ||| || | || || || | || ||| | ||||| || || || || Sbjct 13971 CTGCCCATGGGAGAGCCAGGAGGCCCGCGAGCTCAATCGCGCTATCTTCGAGACCATCTA 13912 Query 364560 TTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTA 364619 | || ||| | |||||||| ||| |||| || |||| | ||| |||| || Sbjct 13911 CTACGCTGCACTCACTGCTTCTAATGAGATGGCCAAGGAGCAGGGTACTTACCCTACATA 13852 Query 364620 TGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATC 364679 | ||| || || ||| |||| || ||||| || || ||| | || || || Sbjct 13851 CGCGGGCTCGCCAGCTTCCGAGGGCAAGCTCCAGCCCGACCTCTGGGGCATTACCCCCTC 13792 Query 364680 TGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTC-GCAACT 364738 | | | ||| |||||| ||| || ||| ||||| | |||| || ||| | |||| Sbjct 13791 GGACAGGTGGGACTGGGCTACCCTCCGTGCCAACATCGCTCAGCACGG-CCTCAGGAACT 13733 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 ||||| | || |||||||| || || || || | ||||| ||||| |||||||||| Sbjct 13732 CCCTCCTCGTGGCACCCATGCCTACAGCATCCACCTCTCAGATTCTCGGCAACAACGAGT 13673 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 ||||||| |||| || ||| | || |||| || ||||| | || || || | | Sbjct 13672 GCTTCGAGCCGTACACCTCCAACATCTACACACGTCGCATTCTTGCGGGCGACTTCACCG 13613 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGA 364918 | || || || |||| || || || || || || ||||| | | | | | Sbjct 13612 TCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCTTGTGGTCGGCCGCCCTTA 13553 Query 364919 AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA-TTTCCAGAAGAT 364977 ||||| | || | ||| || || || |||||||||| || | || | || || || Sbjct 13552 AGAACAAACTCGTGGCCCACAACGGCTCCGTGCAGAACA-TCGACGAGATCCCTGATGAC 13494 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 || ||| | ||||| || || ||||| ||| | ||| |||| || ||||| Sbjct 13493 CTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAGCGCGTCGTCATCGACATGGCC 13434 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 ||||| ||| ||| | ||| |||||||||||| | ||| | | |||| |||| Sbjct 13433 GCCGACCGCTCTGCATACATCGACCAGAGCCAGTCGCTCAACATCTACATGGGAGAGCCT 13374 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 ||| ||||||||| || || ||||| ||||||| Sbjct 13373 TCCTTCGCCAAGCTCACTTCGATGCACTTCTACG 13340 >seq23741 Length=113318 Score = 96.9 bits (106), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA--CGTTCA----TTCGCG 22488 ||||| ||||| || ||||| ||||| ||||| ||| || ||| | || ||| Sbjct 78110 AAGAAGAAGGCGGAGTGGGCCCTGAAGTGGATTGCCAAGGACGGCGTCGAGACCTTTGCG 78169 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || ||||| | | || || | || || ||||| ||||| ||||| | || || || Sbjct 78170 GAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCGCC 78229 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||||| || || || | | ||||| ||||| | || || || ||| | || Sbjct 78230 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCTCATC 78289 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| |||||||||||||| ||| ||||| || Sbjct 78290 AGCCGCGATGAGGGTCTTCACTGCGACTTTGCTTG 78324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302951182244636