Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19772 107 2e-18 seq22211 95.1 1e-14 seq24030 89.7 4e-13 seq18924 89.7 4e-13 seq22955 87.8 2e-12 seq23826 86.0 5e-12 >seq19772 Length=5961 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | ||||| ||||||||||| | | | Sbjct 1550 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 1491 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 1490 GACACGATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1431 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||||| |||||||| | | | | | | ||| || ||| Sbjct 1430 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCCGACTACAAC 1371 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 1370 ATTCAAAAGGAATCAAC 1354 >seq22211 Length=15201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | ||||| ||||||||||| | | | Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || || |||||| ||||| || || || |||||||| || Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| || || || | | | | ||| || ||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 4383 ATTCAAAAGGAGTCAAC 4399 >seq24030 Length=66970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || |||| ||| ||||||||||| | | | Sbjct 66190 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATCACCCTCGAAGTCGAGTCTAGC 66131 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | || || || ||||| ||||| || || || || || || || Sbjct 66130 GATACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 66071 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||||| || || || | | | | | | || || ||| Sbjct 66070 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 66011 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || ||||| Sbjct 66010 ATTCAAAAGGAGTCTAC 65994 >seq18924 Length=24070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || |||| ||| ||||||||||| | Sbjct 17758 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACGATCACCCTCGAAGTCGAGAGCTCG 17699 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 17698 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 17639 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| || || || | | | | | || ||| || ||| Sbjct 17638 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 17579 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 17578 ATCCAGAAGGAGTCTAC 17562 >seq22955 Length=9686 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAA 24065 || || || || || || |||| ||| | || |||||| | | ||| ||||||||| | Sbjct 7874 AAGACCTTGACCGGCAAGACGATCACCCTTGAGGTCGAGTCGAGCGATACCATCGAGAAC 7815 Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 || ||||||||||| ||||| || || || || || || || ||| | || || | | Sbjct 7814 GTTAAACAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAGCGTCTTATCTTC 7755 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | ||||||||| ||||| || | | | | | | ||| || ||||| || || || || Sbjct 7754 GCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAACATCCAGAAGGAGTCG 7695 Query 24186 ACAATTCA 24193 || |||| Sbjct 7694 ACCCTTCA 7687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| ||||||||||| | | | Sbjct 8152 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAAGTCGAGTCGAGC 8093 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || || ||||| ||||| || ||||| || ||||| || Sbjct 8092 GATACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8033 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| || | | | | | | ||| || ||| Sbjct 8032 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 7973 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 7972 ATCCAGAAGGAGTCGAC 7956 >seq23826 Length=10614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | ||||| ||||||||||| | | | Sbjct 8521 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 8580 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || || ||||| ||||| || ||||| || ||||| || Sbjct 8581 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8640 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| || || || | | | | | | ||| || ||| Sbjct 8641 CAGCGCCTCATCTTCGCGGGTAAGCAGCTTGAGGACGGCCGTACCCTTGCCGACTACAAC 8700 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 8701 ATCCAGAAGGAGTCGAC 8717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429809730215190